Variant report

Variant	rs73409838
Chromosome Location	chr15:55500707-55500708
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:55499151..55502246-chr15:55504126..55506184,4	K562	blood:
2	chr15:55496907..55498591-chr15:55499127..55500940,2	K562	blood:
3	chr15:55499772..55503303-chr15:55582922..55584824,3	K562	blood:
4	chr15:55499294..55501265-chr15:55504444..55506030,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12324612	1.00[EUR][1000 genomes]
rs28458789	1.00[EUR][1000 genomes]
rs28495958	1.00[EUR][1000 genomes]
rs60243408	1.00[EUR][1000 genomes]
rs7169189	1.00[EUR][1000 genomes]
rs73407829	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73407831	1.00[EUR][1000 genomes]
rs73407835	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73407844	1.00[EUR][1000 genomes]
rs73407847	1.00[EUR][1000 genomes]
rs73407856	1.00[EUR][1000 genomes]
rs73407873	1.00[EUR][1000 genomes]
rs73419725	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043176	chr15:55010228-55563000	Genic enhancers Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1042741	chr15:55068022-55622497	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1039471	chr15:55137606-55552555	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv917323	chr15:55290499-56041334	Genic enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
5	nsv1043789	chr15:55400872-56092454	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:55489600-55504000	Weak transcription	Spleen	Spleen
2	chr15:55489600-55513200	Weak transcription	Lung	lung
3	chr15:55489800-55503400	Weak transcription	Pancreas	Pancrea
4	chr15:55489800-55540200	Weak transcription	Esophagus	oesophagus
5	chr15:55490000-55501600	Weak transcription	Left Ventricle	heart
6	chr15:55490000-55502000	Weak transcription	Colonic Mucosa	Colon
7	chr15:55490000-55509600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr15:55490000-55510000	Weak transcription	NHLF	lung
9	chr15:55490000-55513000	Weak transcription	Fetal Intestine Large	intestine
10	chr15:55490000-55513200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr15:55490000-55513200	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr15:55490000-55513200	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr15:55490000-55517200	Weak transcription	Aorta	Aorta
14	chr15:55490000-55529400	Weak transcription	Rectal Smooth Muscle	rectum
15	chr15:55490000-55562800	Weak transcription	Ovary	ovary
16	chr15:55490200-55510000	Weak transcription	Fetal Kidney	kidney
17	chr15:55490200-55510200	Weak transcription	Fetal Lung	lung
18	chr15:55490200-55511400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr15:55490200-55511400	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr15:55490200-55511400	Weak transcription	Osteobl	bone
21	chr15:55490200-55513200	Weak transcription	Duodenum Mucosa	Duodenum
22	chr15:55490200-55513800	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr15:55490200-55514000	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr15:55490400-55510000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr15:55490400-55512600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr15:55490600-55510200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr15:55490800-55504200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr15:55491000-55513600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr15:55493800-55501000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr15:55494000-55502000	Strong transcription	Primary neutrophils fromperipheralblood	blood
31	chr15:55495000-55501800	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr15:55497800-55510000	Weak transcription	Primary B cells from cord blood	blood
33	chr15:55497800-55511200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr15:55497800-55513000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr15:55497800-55513000	Weak transcription	Hela-S3	cervix
36	chr15:55497800-55514000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr15:55497800-55518400	Weak transcription	Gastric	stomach
38	chr15:55498000-55505000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr15:55498000-55509400	Weak transcription	Stomach Mucosa	stomach
40	chr15:55498000-55509600	Weak transcription	Primary B cells from peripheral blood	blood
41	chr15:55498000-55509600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr15:55498000-55510000	Weak transcription	Primary T helper cells fromperipheralblood	blood
43	chr15:55498000-55510000	Weak transcription	Liver	Liver
44	chr15:55498000-55510200	Weak transcription	Primary hematopoietic stem cells	blood
45	chr15:55498000-55510200	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr15:55498000-55510400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr15:55498000-55512800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr15:55498000-55512800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr15:55498000-55513200	Weak transcription	Primary T cells from cord blood	blood
50	chr15:55498000-55513400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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