Variant report

Variant	rs73412021
Chromosome Location	chr12:119580689-119580690
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs58472164	1.00[AMR][1000 genomes]
rs59156247	1.00[AMR][1000 genomes]
rs73405980	1.00[AMR][1000 genomes]
rs73405982	1.00[AMR][1000 genomes]
rs73405986	1.00[AMR][1000 genomes]
rs73405988	1.00[AMR][1000 genomes]
rs73408096	1.00[AMR][1000 genomes]
rs73412027	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73412047	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047036	chr12:119477583-119992640	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv902	chr12:119576112-119621140	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:119571200-119594600	Weak transcription	Fetal Brain Male	brain
2	chr12:119571600-119582200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr12:119571800-119583000	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr12:119572000-119583200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr12:119573000-119582600	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr12:119573000-119585000	Weak transcription	Brain Angular Gyrus	brain
7	chr12:119573000-119586000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr12:119574400-119581200	Strong transcription	Brain Germinal Matrix	brain
9	chr12:119577600-119583200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr12:119579200-119583200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr12:119580000-119583000	Weak transcription	Fetal Brain Female	brain
12	chr12:119580600-119581000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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