Variant report

Variant	rs73412232
Chromosome Location	chr15:56084485-56084486
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:56077249..56078804-chr15:56081657..56084527,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs57309930	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs57712261	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58524058	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59666651	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73412222	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73412227	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73412240	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73412242	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043789	chr15:55400872-56092454	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv457157	chr15:55722213-56255774	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv569539	chr15:55722213-56255774	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv833017	chr15:55965957-56157912	Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	esv3366380	chr15:56003224-56141650	Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
6	nsv1052495	chr15:56013617-56102164	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	esv2761910	chr15:56082974-56087827	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56083000-56085000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr15:56083000-56085200	Enhancers	HSMMtube	muscle
3	chr15:56083200-56085000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr15:56083400-56085000	Enhancers	Muscle Satellite Cultured Cells	--
5	chr15:56083400-56085200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr15:56083600-56084600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr15:56083600-56084600	Enhancers	NH-A	brain
8	chr15:56083600-56084800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr15:56083600-56084800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr15:56083600-56084800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr15:56083600-56084800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr15:56083600-56084800	Enhancers	Placenta	Placenta
13	chr15:56083600-56084800	Enhancers	Stomach Mucosa	stomach
14	chr15:56083600-56085000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr15:56083600-56085000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr15:56083600-56085000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr15:56083600-56085000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr15:56083600-56085000	Flanking Active TSS	Hela-S3	cervix
19	chr15:56083600-56085000	Enhancers	HMEC	breast
20	chr15:56083600-56085000	Enhancers	NHLF	lung
21	chr15:56083600-56085000	Enhancers	Osteobl	bone
22	chr15:56083600-56085200	Enhancers	HSMM	muscle
23	chr15:56083800-56084800	Enhancers	Placenta Amnion	Placenta Amnion
24	chr15:56083800-56084800	Enhancers	NHDF-Ad	bronchial
25	chr15:56083800-56085000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr15:56083800-56085000	Enhancers	HepG2	liver
27	chr15:56084200-56084600	Enhancers	Fetal Intestine Small	intestine
28	chr15:56084200-56084800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr15:56084400-56084800	Enhancers	Fetal Thymus	thymus
30	chr15:56084400-56085200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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