Variant report

Variant	rs73412271
Chromosome Location	chr15:56095521-56095522
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1659301	1.00[AMR][1000 genomes]
rs2414423	1.00[AMR][1000 genomes]
rs2576934	1.00[AMR][1000 genomes]
rs28385290	1.00[AMR][1000 genomes]
rs28651446	1.00[AMR][1000 genomes]
rs4307895	1.00[AMR][1000 genomes]
rs576113	1.00[AMR][1000 genomes]
rs576456	1.00[AMR][1000 genomes]
rs58630098	1.00[AMR][1000 genomes]
rs601062	1.00[AMR][1000 genomes]
rs636050	1.00[AMR][1000 genomes]
rs6493804	1.00[AMR][1000 genomes]
rs674899	1.00[AMR][1000 genomes]
rs73416236	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv457157	chr15:55722213-56255774	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv569539	chr15:55722213-56255774	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv833017	chr15:55965957-56157912	Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	esv3366380	chr15:56003224-56141650	Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv1052495	chr15:56013617-56102164	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56093600-56095800	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr15:56094600-56095600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr15:56094600-56095800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr15:56094800-56095600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr15:56095000-56095800	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr15:56095000-56095800	Enhancers	HSMMtube	muscle
7	chr15:56095000-56096000	Enhancers	Fetal Heart	heart
8	chr15:56095200-56095600	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr15:56095200-56095600	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr15:56095200-56095800	Enhancers	Fetal Muscle Leg	muscle
11	chr15:56095200-56095800	Enhancers	Left Ventricle	heart
12	chr15:56095400-56095600	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr15:56095400-56095600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr15:56095400-56095800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr15:56095400-56095800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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