Variant report

Variant	rs73413003
Chromosome Location	chr15:43093449-43093450
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:43093067..43093836-chr15:43218523..43219050,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs73411001	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73413005	1.00[AMR][1000 genomes]
rs73413054	1.00[AMR][1000 genomes]
rs73413063	1.00[AMR][1000 genomes]
rs74012616	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528725	chr15:42755555-43104406	Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv427959	chr15:42931181-43207353	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv977054	chr15:43015821-43171355	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv1050128	chr15:43056145-43262736	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv542368	chr15:43056145-43262736	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv525461	chr15:43062548-43482127	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
7	nsv974564	chr15:43092730-43095751	Strong transcription Weak transcription Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv3311738	chr15:43093227-43093620	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3311739	chr15:43093360-43093519	Strong transcription Weak transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:43030000-43093600	Weak transcription	Colonic Mucosa	Colon
2	chr15:43053600-43112200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr15:43054800-43146000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr15:43056800-43116800	Weak transcription	HepG2	liver
5	chr15:43057600-43107000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr15:43060800-43122200	Weak transcription	GM12878-XiMat	blood
7	chr15:43063400-43093600	Weak transcription	Esophagus	oesophagus
8	chr15:43063400-43136200	Weak transcription	Psoas Muscle	Psoas
9	chr15:43064000-43114200	Weak transcription	Fetal Kidney	kidney
10	chr15:43064800-43150800	Weak transcription	HSMM	muscle
11	chr15:43066400-43095600	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr15:43066600-43097600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr15:43067400-43147200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr15:43067800-43095200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr15:43068400-43093600	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr15:43075200-43093600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr15:43075200-43143800	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr15:43075400-43135800	Weak transcription	HSMMtube	muscle
19	chr15:43075600-43093600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr15:43075600-43093600	Weak transcription	Fetal Lung	lung
21	chr15:43075600-43093600	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr15:43075600-43150800	Weak transcription	Colon Smooth Muscle	Colon
23	chr15:43075800-43093600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr15:43075800-43093600	Weak transcription	Brain Substantia Nigra	brain
25	chr15:43075800-43094400	Weak transcription	Fetal Thymus	thymus
26	chr15:43075800-43117200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr15:43075800-43119200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr15:43075800-43124800	Weak transcription	Hela-S3	cervix
29	chr15:43075800-43134800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr15:43075800-43159200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr15:43076000-43094000	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr15:43077400-43102200	Weak transcription	Fetal Brain Male	brain
33	chr15:43087000-43093600	Weak transcription	Brain Angular Gyrus	brain
34	chr15:43087000-43093600	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr15:43087400-43093600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr15:43089200-43096800	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr15:43089400-43093600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr15:43089400-43093600	Weak transcription	NHLF	lung
39	chr15:43089400-43093800	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr15:43089400-43101800	Weak transcription	NH-A	brain
41	chr15:43089400-43104000	Weak transcription	NHDF-Ad	bronchial
42	chr15:43089400-43105800	Weak transcription	Osteobl	bone
43	chr15:43089600-43118400	Weak transcription	HMEC	breast
44	chr15:43089800-43095200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr15:43089800-43102400	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr15:43089800-43165200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr15:43091000-43096600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr15:43091400-43103000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr15:43091800-43093600	Weak transcription	Pancreas	Pancrea
50	chr15:43091800-43135400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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