Variant report

Variant	rs73413343
Chromosome Location	chr7:106707002-106707003
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:158681069..158681838-chr7:106706499..106707366,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2536489	1.00[AMR][1000 genomes]
rs2536491	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2536497	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2536499	0.83[AMR][1000 genomes]
rs849302	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831087	chr7:106673465-106872460	Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:106686800-106707200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:106701000-106710000	Weak transcription	Right Ventricle	heart
3	chr7:106701600-106716000	Weak transcription	HUVEC	blood vessel
4	chr7:106703200-106708600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr7:106703800-106711400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr7:106704200-106707600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr7:106704600-106708800	Weak transcription	Fetal Kidney	kidney
8	chr7:106705200-106708400	Weak transcription	NHLF	lung
9	chr7:106706200-106707800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr7:106706400-106707400	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr7:106706400-106707600	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr7:106706400-106707800	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr7:106706400-106708600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr7:106706400-106708600	Weak transcription	Ovary	ovary
15	chr7:106706400-106709400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr7:106706400-106709800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr7:106706400-106710000	Weak transcription	Left Ventricle	heart
18	chr7:106706400-106710000	Weak transcription	Pancreas	Pancrea
19	chr7:106706400-106711800	Weak transcription	Brain Anterior Caudate	brain
20	chr7:106706400-106718600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr7:106706400-106720000	Weak transcription	Spleen	Spleen
22	chr7:106706600-106707400	Weak transcription	K562	blood
23	chr7:106706600-106708600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr7:106706600-106708600	Weak transcription	Adipose Nuclei	Adipose
25	chr7:106706600-106708800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr7:106706600-106710000	Weak transcription	Fetal Heart	heart
27	chr7:106706800-106707200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr7:106706800-106708000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr7:106706800-106708000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr7:106706800-106719200	Weak transcription	Fetal Brain Male	brain

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