Variant report

Variant	rs73413895
Chromosome Location	chr9:14212205-14212206
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:14211963..14213596-chr9:14216891..14219507,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10738354	1.00[EUR][1000 genomes]
rs10756538	1.00[EUR][1000 genomes]
rs12001507	0.91[AFR][1000 genomes]
rs16931458	1.00[EUR][1000 genomes]
rs2078463	1.00[EUR][1000 genomes]
rs56951107	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61249449	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7018727	1.00[EUR][1000 genomes]
rs7018901	1.00[EUR][1000 genomes]
rs7018963	1.00[EUR][1000 genomes]
rs7027395	1.00[EUR][1000 genomes]
rs7032410	1.00[EUR][1000 genomes]
rs73411938	1.00[EUR][1000 genomes]
rs73411976	1.00[EUR][1000 genomes]
rs73411989	1.00[EUR][1000 genomes]
rs73413883	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73413897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7853115	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv892593	chr9:13948798-14233159	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1023303	chr9:14025605-14286269	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv540069	chr9:14025605-14286269	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv1029491	chr9:14033607-14942373	Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	nsv429998	chr9:14043516-14214688	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
7	nsv892597	chr9:14163383-14233159	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv915804	chr9:14182608-14903050	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
9	nsv916811	chr9:14210978-14542068	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14192800-14213400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:14199400-14215800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr9:14201200-14220000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr9:14203800-14214200	Weak transcription	Brain Substantia Nigra	brain
5	chr9:14203800-14217200	Enhancers	Fetal Heart	heart
6	chr9:14203800-14219000	Weak transcription	Ovary	ovary
7	chr9:14203800-14221800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr9:14204000-14213000	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr9:14204000-14221800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr9:14206200-14220000	Weak transcription	NHDF-Ad	bronchial
11	chr9:14206400-14215600	Weak transcription	NHLF	lung
12	chr9:14206600-14215800	Weak transcription	Hela-S3	cervix
13	chr9:14206800-14214000	Weak transcription	Placenta	Placenta
14	chr9:14207000-14213400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr9:14207200-14213600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr9:14207600-14213400	Weak transcription	Brain Germinal Matrix	brain
17	chr9:14207800-14213400	Weak transcription	Gastric	stomach
18	chr9:14207800-14216600	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr9:14208000-14213200	Weak transcription	Psoas Muscle	Psoas
20	chr9:14208000-14213400	Weak transcription	Left Ventricle	heart
21	chr9:14208000-14213400	Weak transcription	Lung	lung
22	chr9:14208000-14213400	Weak transcription	Right Ventricle	heart
23	chr9:14208200-14213000	Weak transcription	HepG2	liver
24	chr9:14208200-14213200	Weak transcription	Right Atrium	heart
25	chr9:14208200-14214000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr9:14208600-14212400	Enhancers	Fetal Lung	lung
27	chr9:14208800-14213800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr9:14208800-14221000	Enhancers	Muscle Satellite Cultured Cells	--
29	chr9:14209000-14217400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr9:14209200-14213000	Enhancers	NH-A	brain
31	chr9:14209200-14216800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr9:14209400-14213200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr9:14209600-14214800	Enhancers	Cortex derived primary cultured neurospheres	brain
34	chr9:14209800-14213200	Weak transcription	Adipose Nuclei	Adipose
35	chr9:14209800-14221000	Weak transcription	Fetal Stomach	stomach
36	chr9:14209800-14223200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr9:14210000-14213600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr9:14210000-14213800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr9:14210000-14218000	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr9:14210000-14218000	Weak transcription	Rectal Smooth Muscle	rectum
41	chr9:14210000-14218200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr9:14210200-14213200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr9:14210200-14215600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr9:14210200-14218000	Weak transcription	Brain Angular Gyrus	brain
45	chr9:14210400-14214000	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr9:14210400-14218400	Weak transcription	Brain Hippocampus Middle	brain
47	chr9:14210600-14213200	Weak transcription	Fetal Muscle Leg	muscle
48	chr9:14211200-14213800	Enhancers	Breast Myoepithelial Primary Cells	Breast
49	chr9:14211200-14214400	Enhancers	Stomach Mucosa	stomach
50	chr9:14211400-14212400	Enhancers	Colon Smooth Muscle	Colon

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