Variant report

Variant	rs73415634
Chromosome Location	chr6:35474243-35474244
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TBP	chr6:35474185-35474295	K562	blood:	n/a	n/a

Variant related genes	Relation type
TULP1	TF binding region

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73415628	1.00[AMR][1000 genomes]
rs9689798	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519370	chr6:35378778-35537406	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	72 gene(s)	inside rSNPs	diseases
2	nsv984463	chr6:35432948-35477634	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	67 gene(s)	inside rSNPs	diseases
3	nsv462909	chr6:35457396-35502202	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	24 gene(s)	inside rSNPs	diseases
4	nsv602912	chr6:35457396-35502202	Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	24 gene(s)	inside rSNPs	diseases
5	esv2758048	chr6:35463741-35806504	Genic enhancers Weak transcription Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
6	esv2759420	chr6:35463741-35806504	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
7	esv2761067	chr6:35471246-35573245	Weak transcription Genic enhancers Strong transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35466400-35476800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:35466400-35479200	Weak transcription	Right Ventricle	heart
3	chr6:35466800-35477000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:35466800-35479400	Weak transcription	Right Atrium	heart
5	chr6:35467400-35478600	Weak transcription	Fetal Lung	lung
6	chr6:35473200-35474400	Flanking Bivalent TSS/Enh	HepG2	liver
7	chr6:35473400-35479400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:35473600-35474400	Enhancers	Placenta Amnion	Placenta Amnion
9	chr6:35473600-35474600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:35473600-35474800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
11	chr6:35473600-35477000	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr6:35473800-35474600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:35473800-35475400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr6:35474000-35474400	Bivalent Enhancer	Fetal Intestine Large	intestine
15	chr6:35474000-35476000	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr6:35474000-35476800	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr6:35474200-35474400	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr6:35474200-35474400	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr6:35474200-35474400	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr6:35474200-35474800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
21	chr6:35474200-35475400	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr6:35474200-35476200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr6:35474200-35476600	Enhancers	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links