Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs28465131	1.00[AMR][1000 genomes]
rs57168382	0.89[ASN][1000 genomes]
rs57728847	0.89[ASN][1000 genomes]
rs58823194	0.96[ASN][1000 genomes]
rs59906408	0.86[ASN][1000 genomes]
rs59966258	0.87[ASN][1000 genomes]
rs60982342	0.85[ASN][1000 genomes]
rs61086197	0.91[AFR][1000 genomes]
rs61502810	0.86[ASN][1000 genomes]
rs73415703	1.00[AFR][1000 genomes]
rs73415710	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73415711	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73415715	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73415722	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73415723	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73415738	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73415762	1.00[AFR][1000 genomes]
rs73415765	0.92[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs73417711	0.91[AFR][1000 genomes]
rs73417732	0.91[AFR][1000 genomes]
rs73417767	0.83[AFR][1000 genomes]
rs73417771	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052235	chr15:53677524-54618723	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv542388	chr15:53677524-54618723	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv817539	chr15:54132584-55095235	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	esv1845471	chr15:54556063-54685463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:54547000-54652600	Weak transcription	Fetal Lung	lung
2	chr15:54602800-54638000	Weak transcription	Aorta	Aorta
3	chr15:54613400-54616000	Enhancers	Fetal Brain Male	brain
4	chr15:54614800-54617400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr15:54615800-54616000	Enhancers	Fetal Brain Female	brain

Quick Search: