Variant report

Variant	rs73416623
Chromosome Location	chr9:8269974-8269975
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10114301	0.94[EUR][1000 genomes]
rs57283342	0.88[EUR][1000 genomes]
rs59105276	1.00[EUR][1000 genomes]
rs59260056	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs60903063	0.88[EUR][1000 genomes]
rs61367847	0.94[EUR][1000 genomes]
rs7042428	0.85[AMR][1000 genomes]
rs73414600	1.00[EUR][1000 genomes]
rs73416604	1.00[EUR][1000 genomes]
rs73416613	1.00[EUR][1000 genomes]
rs73416627	1.00[EUR][1000 genomes]
rs73416629	1.00[EUR][1000 genomes]
rs73416633	1.00[EUR][1000 genomes]
rs73418723	0.88[EUR][1000 genomes]
rs73418730	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8414	chr9:7827373-8511613	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv613284	chr9:8165192-8279622	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	diseases
3	nsv1016723	chr9:8223541-8303017	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
4	nsv613285	chr9:8244354-8270248	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
5	nsv466123	chr9:8247628-8270248	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
6	nsv613286	chr9:8247628-8270248	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
7	nsv1031472	chr9:8250901-8712547	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
8	nsv892223	chr9:8258921-8318948	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS	miRNA target site	n/a	inside rSNPs	diseases
9	nsv892224	chr9:8263737-8338431	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS	miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8264400-8274800	Weak transcription	Fetal Intestine Small	intestine
2	chr9:8265400-8270600	Enhancers	Fetal Lung	lung
3	chr9:8268800-8271000	Enhancers	Stomach Mucosa	stomach
4	chr9:8269400-8271000	Enhancers	HepG2	liver
5	chr9:8269600-8270000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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