Variant report

Variant	rs73417181
Chromosome Location	chr11:4117565-4117566
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:3857735..3860667-chr11:4115366..4118226,4	K562	blood:
2	chr11:3861866..3863441-chr11:4116962..4119741,2	MCF-7	breast:
3	chr11:4116202..4117899-chr11:4118829..4121335,2	MCF-7	breast:
4	chr11:4116176..4118411-chr11:4121664..4124693,3	MCF-7	breast:
5	chr11:4116211..4118977-chr11:4131945..4133652,2	K562	blood:
6	chr11:3829231..3830814-chr11:4115429..4117638,2	K562	blood:
7	chr11:3860690..3862593-chr11:4116069..4117581,2	MCF-7	breast:
8	chr11:4116269..4118457-chr11:4145281..4147453,2	MCF-7	breast:
9	chr11:3839155..3841334-chr11:4117148..4119265,2	K562	blood:
10	chr11:4106632..4109495-chr11:4117299..4119032,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000148985	Chromatin interaction
ENSG00000167323	Chromatin interaction
ENSG00000177105	Chromatin interaction
ENSG00000167325	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs58908694	1.00[AMR][1000 genomes]
rs7128991	1.00[AMR][1000 genomes]
rs73419255	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73423098	1.00[AMR][1000 genomes]
rs73425012	1.00[AMR][1000 genomes]
rs73425024	1.00[AMR][1000 genomes]
rs73427003	1.00[AMR][1000 genomes]
rs73427022	1.00[AMR][1000 genomes]
rs73427024	1.00[AMR][1000 genomes]
rs73427029	1.00[AMR][1000 genomes]
rs73427043	1.00[AMR][1000 genomes]
rs73427046	1.00[AMR][1000 genomes]
rs73427049	1.00[AMR][1000 genomes]
rs7934270	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv896896	chr11:4010409-4185595	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	esv2758253	chr11:4055945-4510188	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	esv2759797	chr11:4055945-4510188	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
4	nsv428248	chr11:4055945-4510188	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
5	nsv832053	chr11:4096527-4330263	Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:4115000-4117600	Active TSS	HUES64 Cell Line	embryonic stem cell
2	chr11:4115200-4117600	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr11:4115200-4117600	Active TSS	Right Atrium	heart
4	chr11:4115400-4118200	Active TSS	GM12878-XiMat	blood
5	chr11:4116400-4117600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
6	chr11:4116400-4117800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
7	chr11:4116600-4117600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr11:4116600-4117600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
9	chr11:4116600-4117600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
10	chr11:4116600-4117600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
11	chr11:4116600-4117600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
12	chr11:4116600-4117600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr11:4116600-4117600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr11:4116600-4117600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr11:4116600-4117600	Flanking Active TSS	Adipose Nuclei	Adipose
16	chr11:4116600-4117600	Flanking Active TSS	Brain Cingulate Gyrus	brain
17	chr11:4116600-4117600	Flanking Active TSS	Duodenum Mucosa	Duodenum
18	chr11:4116600-4117600	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
19	chr11:4116600-4117600	Flanking Active TSS	Fetal Intestine Large	intestine
20	chr11:4116600-4117600	Flanking Active TSS	Fetal Lung	lung
21	chr11:4116600-4117600	Flanking Active TSS	Fetal Thymus	thymus
22	chr11:4116600-4117600	Flanking Active TSS	Stomach Smooth Muscle	stomach
23	chr11:4116600-4117600	Flanking Active TSS	Thymus	Thymus
24	chr11:4116600-4117600	Flanking Active TSS	Osteobl	bone
25	chr11:4116600-4117800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr11:4116600-4117800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr11:4116600-4117800	Flanking Active TSS	HUVEC	blood vessel
28	chr11:4116600-4117800	Flanking Active TSS	NH-A	brain
29	chr11:4116600-4118000	Flanking Active TSS	Brain Germinal Matrix	brain
30	chr11:4116600-4118000	Flanking Active TSS	Fetal Brain Female	brain
31	chr11:4116800-4117600	Enhancers	Primary neutrophils fromperipheralblood	blood
32	chr11:4116800-4117600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
33	chr11:4116800-4117600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
34	chr11:4116800-4117600	Flanking Active TSS	Fetal Heart	heart
35	chr11:4116800-4117600	Enhancers	Spleen	Spleen
36	chr11:4116800-4117600	Flanking Active TSS	Hela-S3	cervix
37	chr11:4116800-4117600	Flanking Active TSS	HepG2	liver
38	chr11:4116800-4117800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr11:4116800-4117800	Enhancers	Primary monocytes fromperipheralblood	blood
40	chr11:4116800-4117800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
41	chr11:4116800-4117800	Enhancers	Sigmoid Colon	Sigmoid Colon
42	chr11:4116800-4120000	Transcr. at gene 5' and 3'	Dnd41	blood
43	chr11:4117000-4117600	Flanking Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr11:4117000-4117600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr11:4117000-4117600	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr11:4117000-4117600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
47	chr11:4117000-4117600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
48	chr11:4117000-4117600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
49	chr11:4117000-4117600	Enhancers	Primary B cells from peripheral blood	blood
50	chr11:4117000-4117600	Active TSS	Fetal Muscle Trunk	muscle

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