Variant report

Variant	rs73417433
Chromosome Location	chr9:16509895-16509896
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12003902	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12345489	1.00[EUR][1000 genomes]
rs56679915	1.00[EUR][1000 genomes]
rs56873701	1.00[EUR][1000 genomes]
rs57014573	1.00[EUR][1000 genomes]
rs59485221	1.00[EUR][1000 genomes]
rs7025065	1.00[EUR][1000 genomes]
rs7025366	1.00[EUR][1000 genomes]
rs7025647	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7031782	0.90[EUR][1000 genomes]
rs7035227	0.82[AMR][1000 genomes]
rs7035471	1.00[EUR][1000 genomes]
rs7042044	1.00[EUR][1000 genomes]
rs73415502	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73645989	1.00[EUR][1000 genomes]
rs73645993	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7854653	0.81[EUR][1000 genomes]
rs7858780	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7858802	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1032856	chr9:16465330-16773471	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv540073	chr9:16465330-16773471	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv892646	chr9:16476144-16514375	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS	lncRNA	n/a	inside rSNPs	diseases
6	nsv892647	chr9:16476144-16521534	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv466265	chr9:16484731-16516941	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
8	nsv613670	chr9:16484731-16516941	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16483200-16513600	Weak transcription	Psoas Muscle	Psoas
2	chr9:16500400-16514000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr9:16502200-16510000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr9:16502200-16510000	Weak transcription	HMEC	breast
5	chr9:16505400-16510000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr9:16505400-16510200	Weak transcription	NHEK	skin
7	chr9:16505400-16514000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr9:16505600-16510000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr9:16505600-16510000	Weak transcription	HSMMtube	muscle
10	chr9:16505800-16510000	Weak transcription	Stomach Smooth Muscle	stomach
11	chr9:16506000-16510000	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr9:16506000-16513600	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr9:16506000-16514200	Weak transcription	NHDF-Ad	bronchial
14	chr9:16506000-16515200	Weak transcription	Adipose Nuclei	Adipose
15	chr9:16506200-16515000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr9:16506400-16510000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr9:16506400-16510000	Weak transcription	Osteobl	bone
18	chr9:16506400-16510200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr9:16506400-16510200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr9:16506400-16510200	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr9:16506600-16510000	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr9:16506600-16514000	Weak transcription	Fetal Lung	lung
23	chr9:16507000-16510000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr9:16509000-16510600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr9:16509200-16510000	Enhancers	HUVEC	blood vessel
26	chr9:16509200-16510400	Enhancers	Ovary	ovary
27	chr9:16509400-16510200	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr9:16509400-16510800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr9:16509400-16510800	Enhancers	Muscle Satellite Cultured Cells	--
30	chr9:16509400-16511000	Enhancers	Colon Smooth Muscle	Colon
31	chr9:16509400-16511200	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr9:16509600-16510400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr9:16509600-16510400	Enhancers	Fetal Stomach	stomach
34	chr9:16509600-16510800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr9:16509800-16510000	Enhancers	A549	lung
36	chr9:16509800-16510200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr9:16509800-16510200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr9:16509800-16510200	Enhancers	Aorta	Aorta
39	chr9:16509800-16510200	Enhancers	Rectal Smooth Muscle	rectum
40	chr9:16509800-16510400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr9:16509800-16510400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr9:16509800-16510400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr9:16509800-16510400	Enhancers	Cortex derived primary cultured neurospheres	brain
44	chr9:16509800-16510400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr9:16509800-16510600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr9:16509800-16510600	Enhancers	Placenta Amnion	Placenta Amnion
47	chr9:16509800-16510600	Enhancers	HSMM	muscle
48	chr9:16509800-16510600	Enhancers	NH-A	brain
49	chr9:16509800-16510800	Enhancers	iPS-20b Cell Line	embryonic stem cell
50	chr9:16509800-16511000	Enhancers	Hela-S3	cervix

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