Variant report

Variant	rs73417627
Chromosome Location	chr6:35565801-35565802
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35559772..35562715-chr6:35563847..35566628,3	K562	blood:
2	chr6:35549292..35552152-chr6:35564956..35567156,2	MCF-7	breast:
3	chr6:35564276..35565997-chr6:35567440..35569324,2	MCF-7	breast:
4	chr6:35561670..35563594-chr6:35565549..35568332,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs56727568	0.81[AFR][1000 genomes]
rs58384298	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73415663	0.81[AFR][1000 genomes]
rs73417616	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73417644	1.00[AMR][1000 genomes]
rs73417648	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73417671	1.00[AMR][1000 genomes]
rs73748213	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758048	chr6:35463741-35806504	Genic enhancers Weak transcription Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2759420	chr6:35463741-35806504	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	esv2761067	chr6:35471246-35573245	Weak transcription Genic enhancers Strong transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1031987	chr6:35476562-35579375	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv7889	chr6:35495503-35566388	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
6	nsv462913	chr6:35502202-35592744	Enhancers Genic enhancers ZNF genes & repeats Strong transcription Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
7	nsv602923	chr6:35502202-35592744	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
8	nsv517211	chr6:35502202-35607571	Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
9	nsv1026532	chr6:35502604-35568562	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
10	nsv1021675	chr6:35502604-35569281	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
11	nsv1023091	chr6:35502604-35573233	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
12	nsv1017625	chr6:35505311-35576552	Transcr. at gene 5' and 3' Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
13	nsv1019593	chr6:35505311-35579375	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
14	nsv602924	chr6:35505311-35750299	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
15	nsv1022049	chr6:35506731-35576552	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
16	nsv1026200	chr6:35507179-35568562	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
17	nsv1025296	chr6:35507179-35579375	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
18	nsv885801	chr6:35537406-35671651	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
19	esv3430300	chr6:35549151-35959004	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35534400-35569000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:35539800-35568400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:35541200-35570200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:35545000-35567800	Weak transcription	Stomach Mucosa	stomach
5	chr6:35545000-35568800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr6:35545000-35601800	Weak transcription	Fetal Intestine Small	intestine
7	chr6:35545200-35568800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr6:35545400-35569200	Weak transcription	Placenta	Placenta
9	chr6:35554800-35569200	Weak transcription	Fetal Intestine Large	intestine
10	chr6:35555000-35568000	Weak transcription	Primary B cells from peripheral blood	blood
11	chr6:35555400-35568800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr6:35555400-35569000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr6:35556200-35567800	Weak transcription	Primary B cells from cord blood	blood
14	chr6:35557600-35569000	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr6:35558600-35569200	Weak transcription	Fetal Muscle Leg	muscle
16	chr6:35558600-35580400	Weak transcription	Fetal Muscle Trunk	muscle
17	chr6:35559000-35567800	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr6:35560200-35567600	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr6:35560400-35568400	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr6:35561200-35567600	Weak transcription	Brain Cingulate Gyrus	brain
21	chr6:35561200-35567800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr6:35562600-35567000	Weak transcription	Fetal Heart	heart
23	chr6:35562600-35568600	Weak transcription	GM12878-XiMat	blood
24	chr6:35563200-35567400	Weak transcription	Colon Smooth Muscle	Colon
25	chr6:35563600-35566200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr6:35564200-35566000	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr6:35564600-35566000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr6:35564800-35567800	Weak transcription	Fetal Stomach	stomach
29	chr6:35565000-35566000	Enhancers	NHEK	skin
30	chr6:35565000-35567200	Weak transcription	Brain Anterior Caudate	brain
31	chr6:35565000-35567200	Weak transcription	Brain Hippocampus Middle	brain
32	chr6:35565000-35567800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr6:35565000-35568800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr6:35565000-35569200	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr6:35565200-35566000	Enhancers	HUVEC	blood vessel
36	chr6:35565200-35566800	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr6:35565200-35567200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr6:35565200-35567200	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr6:35565200-35567200	Weak transcription	Small Intestine	intestine
40	chr6:35565200-35567200	Weak transcription	Stomach Smooth Muscle	stomach
41	chr6:35565200-35567400	Enhancers	Primary T cells from cord blood	blood
42	chr6:35565200-35567400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr6:35565200-35567600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr6:35565200-35567600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr6:35565200-35567800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr6:35565200-35567800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
47	chr6:35565200-35567800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
48	chr6:35565200-35567800	Weak transcription	Brain Angular Gyrus	brain
49	chr6:35565200-35567800	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr6:35565200-35567800	Weak transcription	NHDF-Ad	bronchial

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