Variant report

Variant	rs73418869
Chromosome Location	chr15:59391541-59391542
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:59391505..59393672-chr15:59394009..59396903,2	MCF-7	breast:
2	chr15:59388228..59393746-chr15:59399093..59403821,6	K562	blood:
3	chr15:59389408..59391765-chr15:59397121..59399577,2	K562	blood:
4	chr15:59390265..59393691-chr15:59395315..59398621,4	K562	blood:

Variant related genes	Relation type
ENSG00000157456	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73418820	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	esv1850946	chr15:59174539-59429160	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
3	nsv904271	chr15:59249584-59393011	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv520872	chr15:59268410-59395184	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv833025	chr15:59336148-59522176	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59344400-59392800	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr15:59354400-59396800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr15:59355400-59392800	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr15:59355600-59392800	Strong transcription	Liver	Liver
5	chr15:59355600-59396600	Weak transcription	Fetal Heart	heart
6	chr15:59359400-59396600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr15:59364800-59392600	Strong transcription	Primary neutrophils fromperipheralblood	blood
8	chr15:59368200-59392800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
9	chr15:59371600-59392800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr15:59374000-59396800	Weak transcription	Ovary	ovary
11	chr15:59374200-59396600	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr15:59374200-59396800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr15:59374200-59396800	Weak transcription	Right Ventricle	heart
14	chr15:59374400-59396800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr15:59377200-59397000	Weak transcription	Gastric	stomach
16	chr15:59379400-59396600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr15:59380800-59392800	Strong transcription	A549	lung
18	chr15:59381400-59392000	Weak transcription	Aorta	Aorta
19	chr15:59384200-59396400	Weak transcription	Colon Smooth Muscle	Colon
20	chr15:59384200-59396600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr15:59384200-59396600	Weak transcription	NHLF	lung
22	chr15:59384200-59396800	Weak transcription	Lung	lung
23	chr15:59384200-59396800	Weak transcription	Pancreas	Pancrea
24	chr15:59384800-59396400	Weak transcription	K562	blood
25	chr15:59385200-59392200	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr15:59385200-59396800	Weak transcription	Psoas Muscle	Psoas
27	chr15:59385200-59396800	Weak transcription	Small Intestine	intestine
28	chr15:59385400-59396400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr15:59385400-59396600	Weak transcription	Brain Angular Gyrus	brain
30	chr15:59385400-59396600	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr15:59385400-59396800	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr15:59385400-59396800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr15:59385400-59396800	Weak transcription	Brain Germinal Matrix	brain
34	chr15:59385800-59396600	Weak transcription	Rectal Smooth Muscle	rectum
35	chr15:59385800-59396800	Weak transcription	Fetal Muscle Leg	muscle
36	chr15:59385800-59397000	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr15:59385800-59397400	Weak transcription	Spleen	Spleen
38	chr15:59386600-59396400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
39	chr15:59386800-59391600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr15:59387200-59396800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr15:59387400-59396600	Weak transcription	Brain Cingulate Gyrus	brain
42	chr15:59387400-59396800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr15:59387800-59396400	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr15:59387800-59396600	Weak transcription	NHEK	skin
45	chr15:59388000-59396400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr15:59388400-59396600	Weak transcription	Fetal Kidney	kidney
47	chr15:59388800-59396600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr15:59389200-59392000	Weak transcription	HMEC	breast
49	chr15:59389200-59392200	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr15:59389200-59392200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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