Variant report

Variant	rs73419166
Chromosome Location	chr6:34208376-34208377
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:34206853..34209166-chr6:34358536..34360960,2	MCF-7	breast:
2	chr6:34068167..34071108-chr6:34207523..34209656,2	K562	blood:
3	chr6:34207092..34209541-chr6:34759893..34762496,2	K562	blood:
4	chr6:34191465..34193341-chr6:34208084..34210074,2	MCF-7	breast:
5	chr6:33280312..33282313-chr6:34207079..34209267,2	K562	blood:
6	chr6:34112613..34114154-chr6:34208164..34210617,2	K562	blood:
7	chr6:34207322..34209425-chr6:34465568..34467978,2	K562	blood:
8	chr6:34203866..34208750-chr6:34388488..34394053,10	MCF-7	breast:
9	chr6:34208090..34210823-chr6:34391243..34393552,2	K562	blood:
10	chr6:34202383..34217863-chr6:34357259..34364960,37	K562	blood:
11	chr6:34202852..34208935-chr6:34358420..34361531,11	K562	blood:

No data

Variant related genes	Relation type
ENSG00000124493	Chromatin interaction
ENSG00000272325	Chromatin interaction
ENSG00000231925	Chromatin interaction
ENSG00000124614	Chromatin interaction
ENSG00000065060	Chromatin interaction
ENSG00000270800	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs73419168	1.00[AFR][1000 genomes]
rs73419171	1.00[AFR][1000 genomes]
rs73419174	1.00[AFR][1000 genomes]
rs9461965	1.00[AFR][1000 genomes]
rs9469741	0.87[AFR][1000 genomes]
rs9469746	1.00[AFR][1000 genomes]
rs9688762	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432881	chr6:34026522-34213822	Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv885781	chr6:34110257-34247661	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv462903	chr6:34110257-34263743	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	nsv602863	chr6:34110257-34263743	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
5	nsv885782	chr6:34187206-34209516	Active TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
6	nsv885783	chr6:34187206-34209844	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
7	nsv885784	chr6:34187206-34246714	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
8	nsv602865	chr6:34203406-34217181	Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
9	esv1798756	chr6:34203406-34319041	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
10	esv1798835	chr6:34204183-34319041	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
11	esv1840881	chr6:34204285-34231570	Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
12	esv1792088	chr6:34204285-34318837	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
13	esv1793127	chr6:34204285-34319041	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34205400-34216600	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:34206000-34208400	Transcr. at gene 5' and 3'	HUES64 Cell Line	embryonic stem cell
3	chr6:34206000-34212000	Weak transcription	Ovary	ovary
4	chr6:34206200-34208400	Transcr. at gene 5' and 3'	K562	blood
5	chr6:34206200-34208400	Flanking Active TSS	NH-A	brain
6	chr6:34206200-34208600	Transcr. at gene 5' and 3'	HUES6 Cell Line	embryonic stem cell
7	chr6:34206200-34209400	Transcr. at gene 5' and 3'	iPS-20b Cell Line	embryonic stem cell
8	chr6:34206200-34212600	Weak transcription	Aorta	Aorta
9	chr6:34206400-34208400	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr6:34206400-34208600	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
11	chr6:34206400-34208800	Weak transcription	Liver	Liver
12	chr6:34206400-34210000	Weak transcription	HSMMtube	muscle
13	chr6:34206400-34210600	Weak transcription	Right Atrium	heart
14	chr6:34206400-34211600	Weak transcription	Colon Smooth Muscle	Colon
15	chr6:34206400-34211600	Weak transcription	Left Ventricle	heart
16	chr6:34206400-34215800	Weak transcription	Rectal Smooth Muscle	rectum
17	chr6:34206400-34216000	Weak transcription	Fetal Kidney	kidney
18	chr6:34206400-34216000	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr6:34206600-34208400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr6:34206600-34208600	Weak transcription	Brain Germinal Matrix	brain
21	chr6:34206600-34208600	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr6:34206600-34208600	Weak transcription	Brain Substantia Nigra	brain
23	chr6:34206600-34208600	Weak transcription	Pancreas	Pancrea
24	chr6:34206600-34208800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr6:34206600-34208800	Weak transcription	Brain Angular Gyrus	brain
26	chr6:34206600-34208800	Enhancers	Fetal Intestine Large	intestine
27	chr6:34206600-34208800	Genic enhancers	Fetal Intestine Small	intestine
28	chr6:34206600-34208800	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr6:34206600-34208800	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr6:34206600-34209000	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr6:34206600-34209200	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr6:34206600-34209200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr6:34206600-34209200	Weak transcription	Colonic Mucosa	Colon
34	chr6:34206600-34209400	Weak transcription	Right Ventricle	heart
35	chr6:34206800-34208400	Transcr. at gene 5' and 3'	ES-I3 Cell Line	embryonic stem cell
36	chr6:34206800-34208400	Weak transcription	Esophagus	oesophagus
37	chr6:34206800-34208600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr6:34206800-34208600	Weak transcription	Brain Anterior Caudate	brain
39	chr6:34206800-34208600	Weak transcription	Fetal Stomach	stomach
40	chr6:34206800-34208600	Weak transcription	Gastric	stomach
41	chr6:34206800-34208600	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr6:34206800-34208600	Weak transcription	HSMM	muscle
43	chr6:34206800-34208800	Weak transcription	Adipose Nuclei	Adipose
44	chr6:34206800-34208800	Weak transcription	Stomach Smooth Muscle	stomach
45	chr6:34206800-34209200	Weak transcription	Brain Cingulate Gyrus	brain
46	chr6:34206800-34209200	Weak transcription	Brain Hippocampus Middle	brain
47	chr6:34206800-34209200	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr6:34206800-34210200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr6:34206800-34210600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
50	chr6:34207000-34208400	Weak transcription	Fetal Brain Female	brain

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