Variant report

Variant	rs73420262
Chromosome Location	chr15:58206804-58206805
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1441823	1.00[AFR][1000 genomes]
rs1837854	1.00[AFR][1000 genomes]
rs58164542	0.83[AFR][1000 genomes]
rs73420223	0.93[AFR][1000 genomes]
rs73420225	0.93[AFR][1000 genomes]
rs73420229	0.93[AFR][1000 genomes]
rs73420261	1.00[AFR][1000 genomes]
rs73420266	1.00[AFR][1000 genomes]
rs73420270	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv833023	chr15:58161839-58340174	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv569593	chr15:58201698-58308650	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58203400-58210200	Enhancers	Ovary	ovary
2	chr15:58205400-58207200	Enhancers	Fetal Kidney	kidney
3	chr15:58206000-58207200	Enhancers	Adipose Nuclei	Adipose
4	chr15:58206000-58208200	Weak transcription	Fetal Heart	heart
5	chr15:58206000-58208600	Enhancers	Left Ventricle	heart
6	chr15:58206600-58207200	Enhancers	Rectal Mucosa Donor 29	rectum
7	chr15:58206600-58207600	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr15:58206800-58207000	Enhancers	Right Ventricle	heart
9	chr15:58206800-58207000	Enhancers	Stomach Mucosa	stomach
10	chr15:58206800-58207200	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr15:58206800-58207400	Enhancers	Right Atrium	heart
12	chr15:58206800-58207400	Enhancers	Sigmoid Colon	Sigmoid Colon
13	chr15:58206800-58208200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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