Variant report

Variant	rs73422331
Chromosome Location	chr22:27535704-27535705
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr22:27535684-27535731	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000231405	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16983778	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs55811739	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73422334	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917333	chr22:26931825-27692024	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	142 gene(s)	inside rSNPs	diseases
2	esv34168	chr22:27289097-27678031	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv3413125	chr22:27404463-28121577	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
4	nsv459860	chr22:27527005-28181436	Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv588872	chr22:27527005-28181436	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:27530400-27536000	Weak transcription	Ovary	ovary
2	chr22:27531200-27535800	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr22:27532400-27536000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr22:27533600-27537400	Enhancers	Brain Germinal Matrix	brain
5	chr22:27534000-27535800	Weak transcription	HSMM	muscle
6	chr22:27534200-27536000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr22:27534400-27535800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr22:27534400-27536000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr22:27534400-27536000	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr22:27534400-27536000	Weak transcription	HSMMtube	muscle
11	chr22:27534400-27537000	Weak transcription	Fetal Brain Female	brain
12	chr22:27534600-27537200	Enhancers	NH-A	brain
13	chr22:27534800-27536200	Weak transcription	Fetal Brain Male	brain
14	chr22:27535200-27536800	Enhancers	HUVEC	blood vessel
15	chr22:27535200-27537200	Enhancers	Osteobl	bone
16	chr22:27535400-27535800	Enhancers	Muscle Satellite Cultured Cells	--
17	chr22:27535400-27535800	Enhancers	A549	lung
18	chr22:27535400-27536400	Bivalent Enhancer	Fetal Heart	heart
19	chr22:27535400-27536800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr22:27535600-27536200	Enhancers	Aorta	Aorta
21	chr22:27535600-27536600	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr22:27535600-27536800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr22:27535600-27538600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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