Variant report

Variant	rs73422818
Chromosome Location	chr15:57884555-57884556
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7164942	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv1054547	chr15:57600488-57977659	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv904255	chr15:57790436-57907574	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57883400-57884600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
2	chr15:57883400-57884600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr15:57883400-57884600	Flanking Active TSS	Stomach Smooth Muscle	stomach
4	chr15:57883400-57884800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
5	chr15:57883600-57884600	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr15:57883600-57884600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
7	chr15:57883600-57884600	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
8	chr15:57883600-57884600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr15:57883600-57884600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr15:57883600-57884600	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr15:57883600-57884600	Bivalent Enhancer	Fetal Brain Male	brain
12	chr15:57883600-57884600	Flanking Active TSS	HMEC	breast
13	chr15:57883600-57884600	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
14	chr15:57883600-57884800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
15	chr15:57883600-57885400	Active TSS	Duodenum Smooth Muscle	Duodenum
16	chr15:57883800-57884600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr15:57883800-57884600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
18	chr15:57883800-57884600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr15:57883800-57884600	Bivalent/Poised TSS	Primary mononuclear cells fromperipheralblood	Blood
20	chr15:57883800-57884600	Active TSS	Aorta	Aorta
21	chr15:57883800-57884600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
22	chr15:57883800-57884600	Active TSS	Colon Smooth Muscle	Colon
23	chr15:57883800-57884600	Bivalent/Poised TSS	Fetal Brain Female	brain
24	chr15:57883800-57884600	Bivalent/Poised TSS	HepG2	liver
25	chr15:57883800-57884800	Active TSS	H9 Cell Line	embryonic stem cell
26	chr15:57883800-57884800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
27	chr15:57883800-57884800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
28	chr15:57883800-57884800	Active TSS	Brain Angular Gyrus	brain
29	chr15:57883800-57885000	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr15:57883800-57885200	Active TSS	Rectal Smooth Muscle	rectum
31	chr15:57883800-57885600	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr15:57883800-57886000	Active TSS	Rectal Mucosa Donor 29	rectum
33	chr15:57884000-57884600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
34	chr15:57884000-57884600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr15:57884000-57884600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr15:57884000-57884600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
37	chr15:57884000-57884600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
38	chr15:57884000-57884600	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
39	chr15:57884000-57884600	Active TSS	Brain Anterior Caudate	brain
40	chr15:57884000-57884600	Active TSS	Brain Inferior Temporal Lobe	brain
41	chr15:57884000-57884600	Active TSS	Rectal Mucosa Donor 31	rectum
42	chr15:57884000-57884600	Bivalent/Poised TSS	Thymus	Thymus
43	chr15:57884000-57884600	Bivalent/Poised TSS	HSMM	muscle
44	chr15:57884000-57884800	Active TSS	Breast Myoepithelial Primary Cells	Breast
45	chr15:57884000-57884800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr15:57884000-57884800	Active TSS	Brain Substantia Nigra	brain
47	chr15:57884000-57884800	Active TSS	Fetal Intestine Small	intestine
48	chr15:57884000-57884800	Active TSS	Ovary	ovary
49	chr15:57884000-57884800	Active TSS	Psoas Muscle	Psoas
50	chr15:57884000-57884800	Active TSS	Skeletal Muscle Female	skeletal muscle

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