Variant report

Variant	rs73423254
Chromosome Location	chr9:8614981-8614982
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73423259	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031472	chr9:8250901-8712547	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1022796	chr9:8360729-9110046	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv892228	chr9:8482778-8703733	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv831504	chr9:8496277-8665773	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv892230	chr9:8569186-8643259	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv892231	chr9:8569186-8659757	Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv613291	chr9:8573166-8615045	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8586000-8618000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr9:8597200-8615000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr9:8600200-8615000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr9:8610600-8616800	Weak transcription	Ovary	ovary
5	chr9:8611400-8615600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr9:8612200-8615400	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr9:8612400-8615600	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr9:8612400-8615600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr9:8612400-8615600	Enhancers	Brain Substantia Nigra	brain
10	chr9:8612600-8615600	Enhancers	Brain Hippocampus Middle	brain
11	chr9:8613400-8615000	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr9:8613400-8615200	Enhancers	Aorta	Aorta
13	chr9:8613400-8615600	Enhancers	Brain Cingulate Gyrus	brain
14	chr9:8613400-8615600	Enhancers	Fetal Heart	heart
15	chr9:8613600-8615400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr9:8613600-8615400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr9:8613600-8615400	Enhancers	Fetal Brain Male	brain
18	chr9:8613800-8615000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr9:8613800-8615000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr9:8613800-8615000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr9:8613800-8615000	Weak transcription	Brain Angular Gyrus	brain
22	chr9:8613800-8615000	Weak transcription	Psoas Muscle	Psoas
23	chr9:8613800-8615200	Enhancers	Brain Germinal Matrix	brain
24	chr9:8614000-8615000	Weak transcription	Brain Anterior Caudate	brain
25	chr9:8614400-8616000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr9:8614400-8627000	Weak transcription	Fetal Lung	lung
27	chr9:8614600-8615400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr9:8614600-8615600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr9:8614600-8615600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr9:8614600-8615600	Enhancers	Cortex derived primary cultured neurospheres	brain
31	chr9:8614800-8615400	Enhancers	Brain Inferior Temporal Lobe	brain

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