Variant report

Variant	rs7342358
Chromosome Location	chr12:46399979-46399980
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs7956629	1.00[GIH][hapmap]
rs997308	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832397	chr12:46265990-46453733	Strong transcription ZNF genes & repeats Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv983463	chr12:46377328-46403983	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:46399200-46400000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr12:46399200-46400000	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr12:46399400-46400000	Enhancers	H1 Cell Line	embryonic stem cell
4	chr12:46399400-46400000	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr12:46399400-46400000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
6	chr12:46399400-46400000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr12:46399400-46400200	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr12:46399600-46400000	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr12:46399800-46400200	Active TSS	iPS-20b Cell Line	embryonic stem cell
10	chr12:46399800-46400400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links