Variant report

Variant	rs73423746
Chromosome Location	chr11:23811288-23811289
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11027491	0.86[EUR][1000 genomes]
rs11027496	0.95[EUR][1000 genomes]
rs11027505	0.95[EUR][1000 genomes]
rs12292930	0.95[EUR][1000 genomes]
rs1528560	0.98[EUR][1000 genomes]
rs4514410	1.00[EUR][1000 genomes]
rs60238476	0.95[EUR][1000 genomes]
rs73423742	0.91[EUR][1000 genomes]
rs73423747	1.00[EUR][1000 genomes]
rs73423751	1.00[EUR][1000 genomes]
rs73423753	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553757	chr11:23564329-23896729	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv897062	chr11:23687928-24031627	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv916840	chr11:23710275-24064119	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv897063	chr11:23723766-23940407	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv897064	chr11:23767292-23859991	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv897065	chr11:23767292-23882931	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv897066	chr11:23777459-23859991	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv897067	chr11:23777459-23861558	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv897068	chr11:23777459-23882931	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv553765	chr11:23781534-23833286	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv553766	chr11:23781534-23841175	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv467741	chr11:23781534-23944659	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv553767	chr11:23781534-23944659	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv467742	chr11:23783338-23841175	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv467743	chr11:23783338-23841175	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv553768	chr11:23783338-23841175	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	nsv1054145	chr11:23796462-23860421	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	nsv1053104	chr11:23796462-23870291	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
19	nsv1054249	chr11:23796462-23883614	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
20	nsv469943	chr11:23796710-23859991	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
21	nsv527858	chr11:23796711-23859991	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
22	nsv553769	chr11:23796711-23864290	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
23	nsv897069	chr11:23801412-23864290	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
24	nsv553770	chr11:23801412-23865129	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:23810400-23812200	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr11:23810600-23811400	Enhancers	Rectal Mucosa Donor 29	rectum
3	chr11:23810600-23811800	Enhancers	Pancreas	Pancrea
4	chr11:23810600-23811800	Enhancers	Dnd41	blood
5	chr11:23810600-23811800	Enhancers	HepG2	liver
6	chr11:23810600-23812000	Enhancers	Stomach Mucosa	stomach
7	chr11:23810600-23812200	Enhancers	Fetal Intestine Large	intestine
8	chr11:23810600-23812200	Enhancers	Fetal Intestine Small	intestine
9	chr11:23810600-23812200	Enhancers	Sigmoid Colon	Sigmoid Colon
10	chr11:23810800-23811400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:23810800-23811800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr11:23811000-23811800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr11:23811000-23811800	Enhancers	HSMM	muscle
14	chr11:23811000-23812200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr11:23811000-23812200	Enhancers	NH-A	brain
16	chr11:23811200-23811600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:23811200-23811600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr11:23811200-23811800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr11:23811200-23811800	Enhancers	Muscle Satellite Cultured Cells	--
20	chr11:23811200-23811800	Enhancers	Osteobl	bone
21	chr11:23811200-23812000	Enhancers	Placenta Amnion	Placenta Amnion

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