Variant report

Variant	rs73424132
Chromosome Location	chr15:58318222-58318223
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16939728	1.00[AMR][1000 genomes]
rs16977884	0.85[AFR][1000 genomes]
rs28495054	1.00[AMR][1000 genomes]
rs28624780	1.00[AMR][1000 genomes]
rs2899615	1.00[AMR][1000 genomes]
rs35376151	1.00[AMR][1000 genomes]
rs59848816	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61096848	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73424136	1.00[AMR][1000 genomes]
rs73424158	1.00[AMR][1000 genomes]
rs73424185	1.00[AMR][1000 genomes]
rs73424190	1.00[AMR][1000 genomes]
rs73424200	1.00[AMR][1000 genomes]
rs73424201	1.00[AMR][1000 genomes]
rs73426106	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv833023	chr15:58161839-58340174	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv904261	chr15:58258424-58347260	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58317400-58319000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr15:58317600-58318800	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr15:58317600-58319400	ZNF genes & repeats	Adipose Nuclei	Adipose
4	chr15:58318000-58319000	ZNF genes & repeats	Fetal Lung	lung
5	chr15:58318000-58319000	ZNF genes & repeats	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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