Variant report

Variant	rs73426264
Chromosome Location	chr11:17907050-17907051
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:17896076..17899590-chr11:17904076..17908190,3	K562	blood:
2	chr11:17904489..17907254-chr11:17912817..17916274,3	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs73426217	1.00[AFR][1000 genomes]
rs73426221	1.00[AFR][1000 genomes]
rs73426238	1.00[AFR][1000 genomes]
rs73426285	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832078	chr11:17780503-17953521	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
3	nsv897026	chr11:17823296-18084878	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv553590	chr11:17897414-17910664	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17838400-17971600	Weak transcription	Gastric	stomach
2	chr11:17863800-17939200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr11:17864400-17944800	Weak transcription	Ovary	ovary
4	chr11:17868600-17914000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr11:17869000-17909600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr11:17869000-17916400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr11:17872600-17926600	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr11:17876800-17914000	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr11:17882800-17943800	Weak transcription	Rectal Smooth Muscle	rectum
10	chr11:17884400-17919800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr11:17885800-17939200	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr11:17886000-17965200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr11:17888200-17915600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr11:17888200-17916200	Weak transcription	HSMMtube	muscle
15	chr11:17891400-17907400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr11:17895200-17939000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr11:17895800-17914600	Weak transcription	Liver	Liver
18	chr11:17895800-17937200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr11:17895800-17943400	Weak transcription	Pancreas	Pancrea
20	chr11:17896000-17909400	Weak transcription	Fetal Brain Female	brain
21	chr11:17896000-17914000	Weak transcription	Dnd41	blood
22	chr11:17896000-17914200	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr11:17896000-17915600	Weak transcription	Brain Anterior Caudate	brain
24	chr11:17896000-17944600	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr11:17896000-17968000	Weak transcription	Duodenum Mucosa	Duodenum
26	chr11:17896400-17915800	Weak transcription	Fetal Intestine Small	intestine
27	chr11:17896400-17916400	Weak transcription	Right Ventricle	heart
28	chr11:17896400-17939200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr11:17896400-17968000	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr11:17896800-17914200	Weak transcription	Primary hematopoietic stem cells	blood
31	chr11:17896800-17939200	Weak transcription	Stomach Smooth Muscle	stomach
32	chr11:17897000-17914000	Weak transcription	Primary B cells from peripheral blood	blood
33	chr11:17897400-17912800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr11:17897400-17939400	Weak transcription	Adipose Nuclei	Adipose
35	chr11:17897600-17928400	Weak transcription	Primary B cells from cord blood	blood
36	chr11:17897800-17913800	Weak transcription	Left Ventricle	heart
37	chr11:17898000-17916400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr11:17898800-17944200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr11:17899000-17914000	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr11:17899000-17930600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr11:17899200-17943400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr11:17899600-17914000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr11:17899600-17916600	Weak transcription	Primary T helper cells fromperipheralblood	blood
44	chr11:17901800-17913800	Weak transcription	Aorta	Aorta
45	chr11:17901800-17915600	Weak transcription	Thymus	Thymus
46	chr11:17905600-17909000	Strong transcription	HepG2	liver
47	chr11:17906000-17908600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr11:17906000-17970200	Weak transcription	Lung	lung
49	chr11:17906200-17909400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr11:17906600-17907800	Weak transcription	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links