Variant report

Variant	rs73426610
Chromosome Location	chr9:21564228-21564229
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr9:21563559-21567171	HCT-116	colon:	n/a	n/a
2	PRDM1	chr9:21564092-21564359	Hela-S3	cervix:	n/a	chr9:21564102-21564116 chr9:21564102-21564115
3	TCF12	chr9:21564146-21566008	A549	lung:	n/a	n/a
4	SP1	chr9:21563704-21566300	HCT-116	colon:	n/a	chr9:21566213-21566223
5	POLR2A	chr9:21564136-21564760	HCT-116	colon:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:21562099..21564430-chr9:21569100..21571826,2	MCF-7	breast:

Variant related genes	Relation type
MIR31HG	TF binding region

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73426645	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031432	chr9:21472601-21608774	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	122 gene(s)	inside rSNPs	diseases
2	nsv540085	chr9:21472601-21608774	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	122 gene(s)	inside rSNPs	diseases
3	nsv1029634	chr9:21542970-21765286	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21560800-21565200	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr9:21560800-21567400	Weak transcription	NHDF-Ad	bronchial
3	chr9:21561000-21564400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr9:21561000-21565200	Weak transcription	NHLF	lung
5	chr9:21563600-21564400	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr9:21563600-21564600	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr9:21563600-21564800	Enhancers	HMEC	breast
8	chr9:21563600-21565600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr9:21563800-21564600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr9:21563800-21564600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr9:21563800-21565400	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr9:21563800-21565400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr9:21563800-21567000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr9:21563800-21567200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr9:21564000-21567200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr9:21564200-21564400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr9:21564200-21564600	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr9:21564200-21564600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr9:21564200-21564600	Flanking Active TSS	Hela-S3	cervix
20	chr9:21564200-21564600	Enhancers	NHEK	skin
21	chr9:21564200-21565000	Flanking Active TSS	A549	lung
22	chr9:21564200-21566600	Enhancers	NH-A	brain
23	chr9:21564200-21567000	Enhancers	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links