Variant report

Variant	rs73426624
Chromosome Location	chr6:44001959-44001960
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:43996792..44000305-chr6:44001908..44006580,5	K562	blood:
2	chr6:44000587..44003564-chr6:44020745..44022886,2	K562	blood:
3	chr6:44000503..44002452-chr6:44018662..44021217,2	MCF-7	breast:
4	chr6:44000324..44004665-chr6:44006537..44011128,6	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73426633	1.00[EUR][1000 genomes]
rs73426639	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931987	chr6:43624625-44350167	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	201 gene(s)	inside rSNPs	diseases
2	nsv462934	chr6:43956615-44007446	Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv603001	chr6:43956615-44007446	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:43979400-44010400	Weak transcription	Pancreas	Pancrea
2	chr6:43979600-44002200	Weak transcription	Right Ventricle	heart
3	chr6:43988600-44009200	Weak transcription	Right Atrium	heart
4	chr6:43993200-44009000	Weak transcription	Esophagus	oesophagus
5	chr6:43994800-44003200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr6:43995000-44002000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr6:43996800-44002000	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr6:43997400-44002200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:43997400-44002800	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr6:43997400-44003000	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr6:43998000-44002000	Weak transcription	Fetal Muscle Leg	muscle
12	chr6:43998200-44002000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:43998200-44002000	Weak transcription	NHLF	lung
14	chr6:43998200-44002400	Weak transcription	NHDF-Ad	bronchial
15	chr6:43999000-44002000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr6:43999200-44002000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr6:43999200-44002000	Weak transcription	Fetal Stomach	stomach
18	chr6:43999200-44002000	Weak transcription	Spleen	Spleen
19	chr6:43999200-44002200	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr6:44000600-44004800	Enhancers	HMEC	breast
21	chr6:44001000-44004600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr6:44001600-44002400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr6:44001600-44003200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr6:44001600-44004600	Enhancers	Muscle Satellite Cultured Cells	--
25	chr6:44001600-44004600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr6:44001600-44004600	Enhancers	NHEK	skin
27	chr6:44001600-44004800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr6:44001600-44005600	Enhancers	Primary monocytes fromperipheralblood	blood
29	chr6:44001800-44002000	Enhancers	HepG2	liver
30	chr6:44001800-44002000	Enhancers	HSMM	muscle
31	chr6:44001800-44002000	Enhancers	Monocytes-CD14+_RO01746	blood
32	chr6:44001800-44002800	Flanking Active TSS	Hela-S3	cervix
33	chr6:44001800-44003000	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr6:44001800-44003200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr6:44001800-44004600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr6:44001800-44004600	Enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr6:44001800-44004600	Enhancers	Osteobl	bone

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