Variant report

Variant	rs73427441
Chromosome Location	chr8:131462945-131462946
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:131454459..131461089-chr8:131462437..131468873,11	MCF-7	breast:
2	chr5:10249679..10251379-chr8:131460835..131463636,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000153317	Chromatin interaction
ENSG00000150753	Chromatin interaction
ENSG00000150756	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12056781	0.91[ASN][1000 genomes]
rs16904263	0.86[ASN][1000 genomes]
rs16904264	0.86[ASN][1000 genomes]
rs67552634	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs68113520	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73427442	1.00[ASN][1000 genomes]
rs73427444	0.97[ASN][1000 genomes]
rs9643254	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869334	chr8:131025093-131651487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv915580	chr8:131025093-131667578	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv533085	chr8:131042781-131755007	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:131458000-131463000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:131458000-131464600	Weak transcription	Adipose Nuclei	Adipose
3	chr8:131458200-131465600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:131458600-131463200	Weak transcription	HUVEC	blood vessel
5	chr8:131459000-131464200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr8:131459000-131468800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr8:131459200-131465600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr8:131459200-131468200	Weak transcription	Fetal Heart	heart
9	chr8:131460800-131463800	Weak transcription	NH-A	brain
10	chr8:131461000-131464000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr8:131461000-131464000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr8:131461000-131464000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr8:131461400-131464000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr8:131461400-131470000	Weak transcription	HMEC	breast
15	chr8:131461800-131464000	Weak transcription	Osteobl	bone
16	chr8:131462000-131464000	Weak transcription	Placenta	Placenta
17	chr8:131462000-131464000	Weak transcription	Fetal Stomach	stomach
18	chr8:131462000-131468600	Weak transcription	NHLF	lung
19	chr8:131462200-131463600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr8:131462200-131464000	Weak transcription	Spleen	Spleen
21	chr8:131462200-131468800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr8:131462600-131464200	Weak transcription	NHDF-Ad	bronchial
23	chr8:131462800-131463200	Enhancers	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links