Variant report

Variant	rs73428349
Chromosome Location	chr11:18016074-18016075
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:18013568..18016521-chr11:18123869..18126063,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs59292202	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61503530	1.00[AMR][1000 genomes]
rs73426284	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv897026	chr11:17823296-18084878	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv832079	chr11:17927967-18047743	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17934400-18033600	Weak transcription	Small Intestine	intestine
2	chr11:17944000-18026600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr11:17945400-18033400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr11:17961000-18016200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:17971200-18026000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr11:17975000-18020200	Weak transcription	A549	lung
7	chr11:17978200-18016200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr11:17979800-18016400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr11:17980400-18033600	Weak transcription	Colonic Mucosa	Colon
10	chr11:17981200-18033200	Weak transcription	Esophagus	oesophagus
11	chr11:17989400-18023400	Weak transcription	Gastric	stomach
12	chr11:17989400-18033400	Weak transcription	Pancreas	Pancrea
13	chr11:17991000-18027000	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr11:17994000-18033400	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr11:17996600-18032400	Weak transcription	Fetal Brain Male	brain
16	chr11:17998400-18033200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr11:18002400-18033800	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr11:18006800-18021000	Weak transcription	Placenta	Placenta
19	chr11:18007000-18017800	Strong transcription	Dnd41	blood
20	chr11:18007000-18029200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr11:18007600-18016600	Weak transcription	Aorta	Aorta
22	chr11:18007800-18021000	Weak transcription	Psoas Muscle	Psoas
23	chr11:18008200-18016600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr11:18008200-18025800	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr11:18008200-18033200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr11:18008400-18016200	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr11:18008400-18023800	Weak transcription	Fetal Lung	lung
28	chr11:18008400-18026800	Weak transcription	NH-A	brain
29	chr11:18008600-18016400	Weak transcription	NHLF	lung
30	chr11:18008600-18022600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr11:18008600-18033600	Weak transcription	NHDF-Ad	bronchial
32	chr11:18008800-18020800	Weak transcription	Fetal Kidney	kidney
33	chr11:18008800-18025800	Weak transcription	NHEK	skin
34	chr11:18008800-18033400	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr11:18008800-18033400	Weak transcription	HUVEC	blood vessel
36	chr11:18009000-18020400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr11:18009200-18017000	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr11:18009200-18020400	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr11:18009200-18021600	Weak transcription	Fetal Intestine Small	intestine
40	chr11:18009200-18026200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr11:18009200-18026800	Weak transcription	K562	blood
42	chr11:18009400-18020600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr11:18009400-18033600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr11:18009600-18020600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr11:18009600-18021200	Weak transcription	Osteobl	bone
46	chr11:18009800-18016200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr11:18009800-18016600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr11:18010000-18016800	Weak transcription	Colon Smooth Muscle	Colon
49	chr11:18010200-18016200	Weak transcription	Adipose Nuclei	Adipose
50	chr11:18010200-18016200	Weak transcription	Brain Substantia Nigra	brain

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