Variant report

Variant	rs73428962
Chromosome Location	chr9:18305676-18305677
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs56223223	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs56239359	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs57441773	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs58078711	0.89[AMR][1000 genomes]
rs58101349	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs58134546	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs58737975	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs58992443	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs59737180	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs61225378	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs61674850	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs73428943	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73428945	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73428946	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73428948	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73428949	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73428951	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73428953	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73428956	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73428964	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73428965	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73428970	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs73428971	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs73428986	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831522	chr9:18231982-18459492	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv491807	chr9:18243672-19009770	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	esv2764161	chr9:18247433-18443060	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv892684	chr9:18261485-18401585	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv892686	chr9:18273100-18328341	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv525659	chr9:18288212-19009041	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
7	nsv1019127	chr9:18288271-18996288	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
8	nsv430001	chr9:18301116-18346392	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv982617	chr9:18303073-18318205	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
10	nsv892687	chr9:18303691-18430297	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18305000-18306000	Enhancers	H1 Cell Line	embryonic stem cell
2	chr9:18305000-18306000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr9:18305000-18306000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:18305000-18306000	Enhancers	H9 Cell Line	embryonic stem cell
5	chr9:18305000-18306000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr9:18305000-18306000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr9:18305000-18306000	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr9:18305000-18306000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr9:18305000-18306000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr9:18305200-18305800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr9:18305200-18305800	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr9:18305200-18305800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr9:18305200-18306000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr9:18305200-18306000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr9:18305400-18305800	Enhancers	Fetal Stomach	stomach
16	chr9:18305400-18306000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr9:18305400-18306000	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr9:18305400-18306200	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr9:18305400-18315600	Weak transcription	Gastric	stomach
20	chr9:18305600-18306000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
21	chr9:18305600-18306000	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr9:18305600-18306000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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