Variant report

Variant	rs73429069
Chromosome Location	chr6:30452489-30452490
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:30451337..30455149-chr6:30456477..30458768,3	MCF-7	breast:
2	chr6:30450075..30454964-chr6:30456336..30460057,8	MCF-7	breast:
3	chr6:30451219..30453103-chr6:30692483..30694829,2	K562	blood:
4	chr6:30451638..30453574-chr6:30484466..30486463,2	K562	blood:
5	chr6:30451366..30455453-chr6:30455599..30459533,6	K562	blood:
6	chr6:30449909..30452819-chr6:30563358..30566713,3	K562	blood:
7	chr6:30452366..30463564-chr6:30577885..30586736,19	MCF-7	breast:
8	chr6:30450855..30453185-chr6:30509734..30512303,2	K562	blood:
9	chr6:30450826..30454342-chr6:30455231..30458641,4	K562	blood:
10	chr6:30448170..30453321-chr6:30582822..30586539,6	K562	blood:
11	chr6:30450929..30459545-chr6:30516289..30528141,20	K562	blood:
12	chr6:30450665..30453098-chr6:30612269..30613984,2	MCF-7	breast:

No data

No data

No data

Variant related genes	Relation type
ENSG00000204568	Chromatin interaction
ENSG00000204592	Chromatin interaction
ENSG00000222894	Chromatin interaction
ENSG00000204569	Chromatin interaction
ENSG00000204576	Chromatin interaction
ENSG00000204590	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs2077571	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2078676	0.83[AMR][1000 genomes]
rs4959049	0.84[EUR][1000 genomes]
rs4959051	0.89[EUR][1000 genomes]
rs58101292	0.89[EUR][1000 genomes]
rs58314420	0.89[EUR][1000 genomes]
rs58504477	0.89[EUR][1000 genomes]
rs59168158	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59865400	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60118758	0.89[EUR][1000 genomes]
rs60162146	0.89[EUR][1000 genomes]
rs61152365	0.89[EUR][1000 genomes]
rs73427102	1.00[AFR][1000 genomes]
rs73429072	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025667	chr6:30292845-30638066	Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	825 gene(s)	inside rSNPs	diseases
2	esv3519970	chr6:30382942-31378788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
3	esv3519971	chr6:30382942-31378788	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
4	nsv601481	chr6:30422632-31284253	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1012 gene(s)	inside rSNPs	diseases
5	nsv884070	chr6:30430875-30472772	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	30 gene(s)	inside rSNPs	diseases
6	nsv884076	chr6:30434566-30483919	Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	30 gene(s)	inside rSNPs	diseases
7	nsv884077	chr6:30434900-30512163	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
8	esv3430377	chr6:30443802-30814426	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	967 gene(s)	inside rSNPs	diseases
9	nsv970103	chr6:30452455-30460072	Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30450000-30453800	Weak transcription	Spleen	Spleen
2	chr6:30450200-30454400	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr6:30450200-30455600	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr6:30450400-30452600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr6:30450400-30455400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr6:30451600-30452600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr6:30451600-30455600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr6:30452200-30455600	Weak transcription	Primary hematopoietic stem cells	blood
9	chr6:30452400-30455400	Weak transcription	Primary B cells from peripheral blood	blood
10	chr6:30452400-30455400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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