Variant report

Variant	rs73429411
Chromosome Location	chr11:26049994-26049995
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs16915093	1.00[AFR][1000 genomes]
rs16915132	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55635751	0.83[AFR][1000 genomes]
rs59561199	0.94[AFR][1000 genomes]
rs60164339	0.92[AFR][1000 genomes]
rs61273760	0.96[AFR][1000 genomes]
rs73429484	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73429499	0.98[AFR][1000 genomes]
rs73431404	0.88[AFR][1000 genomes]
rs73431422	0.94[AFR][1000 genomes]
rs73447542	0.98[AFR][1000 genomes]
rs73447544	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs977801	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760599	chr11:25186984-26159450	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1046507	chr11:25469712-26111707	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1041778	chr11:25898574-26098141	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26046600-26051200	Enhancers	Hela-S3	cervix
2	chr11:26049400-26050600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr11:26049600-26050400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr11:26049800-26050200	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr11:26049800-26050200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr11:26049800-26050200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr11:26049800-26050400	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr11:26049800-26050400	Enhancers	GM12878-XiMat	blood
9	chr11:26049800-26050400	Enhancers	NHDF-Ad	bronchial
10	chr11:26049800-26050600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links