Variant report

Variant	rs73431081
Chromosome Location	chr6:30501389-30501390
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:30501371..30504136-chr6:30577423..30580435,3	K562	blood:
2	chr6:30495618..30498442-chr6:30501086..30503678,2	MCF-7	breast:
3	chr6:30461707..30464004-chr6:30498859..30501819,2	MCF-7	breast:
4	chr6:30457150..30459406-chr6:30498043..30501943,4	K562	blood:
5	chr6:30455559..30458107-chr6:30499616..30502818,3	MCF-7	breast:
6	chr6:30498128..30503882-chr6:30581008..30585701,7	K562	blood:
7	chr6:30498826..30501960-chr6:30560554..30564366,3	MCF-7	breast:
8	chr6:30500351..30502392-chr6:30508622..30511098,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000204592	Chromatin interaction
ENSG00000204569	Chromatin interaction
ENSG00000204568	Chromatin interaction
ENSG00000222894	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11548296	1.00[ASN][1000 genomes]
rs58980373	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59549358	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60716469	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60791005	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61356961	1.00[ASN][1000 genomes]
rs6927597	1.00[ASN][1000 genomes]
rs6927603	1.00[ASN][1000 genomes]
rs73431018	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73433105	1.00[ASN][1000 genomes]
rs73433115	1.00[ASN][1000 genomes]
rs7754598	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9800637	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025667	chr6:30292845-30638066	Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	825 gene(s)	inside rSNPs	diseases
2	esv3519970	chr6:30382942-31378788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
3	esv3519971	chr6:30382942-31378788	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
4	nsv601481	chr6:30422632-31284253	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1012 gene(s)	inside rSNPs	diseases
5	nsv884077	chr6:30434900-30512163	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
6	esv3430377	chr6:30443802-30814426	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	967 gene(s)	inside rSNPs	diseases
7	nsv884086	chr6:30462084-30672757	Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	798 gene(s)	inside rSNPs	diseases
8	nsv884090	chr6:30497652-30510992	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30496400-30513400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:30497600-30513400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:30498400-30501400	Weak transcription	Fetal Intestine Large	intestine
4	chr6:30498600-30501400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr6:30499400-30502000	Enhancers	Primary T killer memory cells from peripheral blood	blood
6	chr6:30499800-30501800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr6:30500200-30501800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr6:30500400-30501400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr6:30500400-30501600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
10	chr6:30500400-30501800	Weak transcription	Stomach Mucosa	stomach
11	chr6:30500400-30509400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr6:30500600-30509200	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr6:30500600-30509400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:30500800-30501400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr6:30500800-30501400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr6:30500800-30501400	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr6:30500800-30501600	Enhancers	Duodenum Mucosa	Duodenum
18	chr6:30500800-30501600	Enhancers	K562	blood
19	chr6:30500800-30501800	Enhancers	Primary T helper cells fromperipheralblood	blood
20	chr6:30500800-30509200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr6:30500800-30509400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr6:30501000-30501600	Enhancers	Small Intestine	intestine
23	chr6:30501200-30501400	Enhancers	Primary T helper naive cells from peripheral blood	blood
24	chr6:30501200-30501400	Flanking Active TSS	Liver	Liver
25	chr6:30501200-30501400	Flanking Active TSS	GM12878-XiMat	blood
26	chr6:30501200-30501600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
27	chr6:30501200-30501600	Active TSS	Duodenum Smooth Muscle	Duodenum
28	chr6:30501200-30501800	Active TSS	Primary T regulatory cells fromperipheralblood	blood
29	chr6:30501200-30502000	Flanking Active TSS	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links