Variant report

Variant	rs73431819
Chromosome Location	chr9:26828642-26828643
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs41271167	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55890673	1.00[EUR][1000 genomes]
rs60815330	1.00[EUR][1000 genomes]
rs7030538	1.00[EUR][1000 genomes]
rs7046322	1.00[EUR][1000 genomes]
rs73431838	1.00[EUR][1000 genomes]
rs7847782	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026827	chr9:26693515-26904699	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	esv3373096	chr9:26825001-26848031	Weak transcription ZNF genes & repeats Strong transcription Enhancers	Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26822200-26889400	Weak transcription	Psoas Muscle	Psoas
2	chr9:26822600-26846200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:26828000-26829400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr9:26828200-26829000	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr9:26828200-26829000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr9:26828200-26829000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr9:26828200-26829000	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr9:26828400-26829800	Enhancers	Primary neutrophils fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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