Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:18031292..18032013-chr11:18136940..18137699,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000129158	Chromatin interaction

rSNPs within LD-proxies of this variant (count:4)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv982925	chr11:18132176-18153921	Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18128400-18137400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr11:18129000-18139000	Weak transcription	Right Atrium	heart
3	chr11:18134800-18137200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr11:18136600-18141600	Enhancers	HepG2	liver
5	chr11:18136800-18137200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr11:18136800-18137400	Enhancers	Hela-S3	cervix
7	chr11:18136800-18137600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:18136800-18139800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr11:18136800-18141600	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr11:18137000-18137200	Enhancers	Brain Hippocampus Middle	brain
11	chr11:18137000-18137200	Flanking Active TSS	Dnd41	blood
12	chr11:18137000-18137200	Enhancers	GM12878-XiMat	blood
13	chr11:18137000-18137400	Enhancers	Primary B cells from peripheral blood	blood
14	chr11:18137000-18137400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
15	chr11:18137000-18137400	Enhancers	Brain Angular Gyrus	brain
16	chr11:18137000-18137400	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr11:18137000-18137400	Enhancers	Stomach Mucosa	stomach
18	chr11:18137000-18137600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
19	chr11:18137000-18137600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr11:18137000-18137600	Enhancers	Liver	Liver
21	chr11:18137000-18137600	Enhancers	Duodenum Mucosa	Duodenum

Quick Search: