Variant report

Variant	rs73432755
Chromosome Location	chr22:28206081-28206082
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11912573	1.00[AMR][1000 genomes]
rs73427710	1.00[AMR][1000 genomes]
rs73427716	1.00[AMR][1000 genomes]
rs8137442	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059972	chr22:28089263-28227579	Active TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv829144	chr22:28172266-28209317	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv829145	chr22:28190900-28207081	Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28199000-28206200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr22:28199000-28206200	Weak transcription	Right Ventricle	heart
3	chr22:28199000-28206400	Weak transcription	Right Atrium	heart
4	chr22:28200800-28206200	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr22:28200800-28206200	Weak transcription	NHEK	skin
6	chr22:28201000-28206200	Weak transcription	Liver	Liver
7	chr22:28201200-28206200	Weak transcription	Gastric	stomach
8	chr22:28201200-28206200	Weak transcription	Ovary	ovary
9	chr22:28201200-28206400	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr22:28201400-28206200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr22:28201800-28206200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr22:28204000-28206400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr22:28204000-28206400	Enhancers	Fetal Muscle Trunk	muscle
14	chr22:28204400-28207600	Enhancers	H1 Cell Line	embryonic stem cell
15	chr22:28204600-28206400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr22:28204600-28206600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr22:28204600-28207800	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr22:28204600-28208000	Enhancers	Placenta Amnion	Placenta Amnion
19	chr22:28204800-28206200	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr22:28205000-28206600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr22:28205000-28207000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr22:28205200-28206200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr22:28205200-28206600	Enhancers	Primary hematopoietic stem cells	blood
24	chr22:28205200-28206800	Enhancers	Brain Germinal Matrix	brain
25	chr22:28205200-28206800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
26	chr22:28205200-28206800	Enhancers	Lung	lung
27	chr22:28205200-28207000	Bivalent Enhancer	Fetal Stomach	stomach
28	chr22:28205200-28208000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr22:28205400-28206200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr22:28205400-28206200	Enhancers	Stomach Smooth Muscle	stomach
31	chr22:28205400-28206600	Enhancers	HUVEC	blood vessel
32	chr22:28205400-28207400	Enhancers	Fetal Muscle Leg	muscle
33	chr22:28205600-28206400	Enhancers	Rectal Smooth Muscle	rectum
34	chr22:28205600-28207000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr22:28205600-28207200	Enhancers	Brain Cingulate Gyrus	brain
36	chr22:28205600-28207400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
37	chr22:28205600-28207400	Enhancers	Esophagus	oesophagus
38	chr22:28205800-28206400	Enhancers	HUES6 Cell Line	embryonic stem cell
39	chr22:28205800-28206400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr22:28205800-28207600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr22:28206000-28206200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr22:28206000-28206200	Enhancers	Colon Smooth Muscle	Colon
43	chr22:28206000-28206200	Enhancers	NHDF-Ad	bronchial
44	chr22:28206000-28206400	Enhancers	Hela-S3	cervix
45	chr22:28206000-28206400	Enhancers	K562	blood
46	chr22:28206000-28207200	Enhancers	Colonic Mucosa	Colon
47	chr22:28206000-28207400	Enhancers	ES-I3 Cell Line	embryonic stem cell
48	chr22:28206000-28207600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr22:28206000-28207600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr22:28206000-28207600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links