Variant report

Variant	rs73435894
Chromosome Location	chr7:120126400-120126401
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs56171613	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs58530897	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73435851	1.00[EUR][1000 genomes]
rs73435855	1.00[EUR][1000 genomes]
rs73435875	1.00[EUR][1000 genomes]
rs73435881	1.00[EUR][1000 genomes]
rs73435884	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73435897	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73437825	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73437852	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73437868	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73437869	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73721408	1.00[EUR][1000 genomes]
rs73721409	0.85[AMR][1000 genomes]
rs73721412	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73721413	1.00[EUR][1000 genomes]
rs7789614	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516686	chr7:120015843-120223084	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1026821	chr7:120020317-120190437	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv889116	chr7:120098304-120180671	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv889117	chr7:120122040-120266458	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120117400-120126400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:120121200-120131200	Weak transcription	GM12878-XiMat	blood
3	chr7:120122600-120139400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:120125600-120127800	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr7:120125800-120126400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr7:120126200-120127800	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr7:120126200-120127800	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr7:120126200-120127800	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr7:120126200-120127800	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr7:120126200-120127800	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr7:120126400-120126600	Enhancers	H9 Cell Line	embryonic stem cell
12	chr7:120126400-120126800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr7:120126400-120127200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr7:120126400-120127800	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr7:120126400-120128000	Enhancers	H1 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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