Variant report

Variant	rs73437615
Chromosome Location	chr6:44296145-44296146
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs4711778	0.85[ASN][1000 genomes]
rs58579648	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73437613	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9369474	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9369475	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9381309	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9472249	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931987	chr6:43624625-44350167	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	201 gene(s)	inside rSNPs	diseases
2	nsv516456	chr6:44282316-44298309	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44293200-44296200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:44294200-44297000	Weak transcription	Right Atrium	heart
3	chr6:44294600-44296400	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr6:44294800-44297400	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr6:44295000-44296200	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:44295000-44296200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr6:44295000-44296800	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr6:44295200-44296200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:44295200-44296200	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr6:44295600-44296200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:44295600-44296200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
12	chr6:44295800-44296400	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr6:44295800-44300000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr6:44296000-44296200	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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