Variant report

Variant	rs73437897
Chromosome Location	chr22:28754920-28754921
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:28746054..28748860-chr22:28753895..28756337,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs61140789	1.00[AMR][1000 genomes]
rs7286036	1.00[AMR][1000 genomes]
rs7289729	1.00[AMR][1000 genomes]
rs7293211	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73427735	1.00[AMR][1000 genomes]
rs73427742	1.00[AMR][1000 genomes]
rs73427769	1.00[AMR][1000 genomes]
rs73427770	1.00[AMR][1000 genomes]
rs73427775	1.00[AMR][1000 genomes]
rs73430165	1.00[AMR][1000 genomes]
rs73432204	1.00[AMR][1000 genomes]
rs73432211	1.00[AMR][1000 genomes]
rs73437891	1.00[AMR][1000 genomes]
rs73439834	1.00[AMR][1000 genomes]
rs8138507	1.00[AMR][1000 genomes]
rs8140238	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28741600-28759000	Weak transcription	Fetal Stomach	stomach
2	chr22:28742800-28759600	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr22:28743000-28759000	Weak transcription	Dnd41	blood
4	chr22:28748000-28755800	Weak transcription	Fetal Intestine Small	intestine
5	chr22:28748000-28759600	Weak transcription	Fetal Lung	lung
6	chr22:28752800-28759000	Weak transcription	Ovary	ovary
7	chr22:28752800-28768600	Weak transcription	Left Ventricle	heart
8	chr22:28753200-28755000	Enhancers	Brain Germinal Matrix	brain
9	chr22:28753800-28755000	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr22:28754000-28755000	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr22:28754000-28759400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr22:28754200-28755000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr22:28754200-28755000	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr22:28754200-28755000	Enhancers	Right Ventricle	heart
15	chr22:28754200-28755800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr22:28754200-28755800	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr22:28754200-28756200	Enhancers	Fetal Brain Male	brain
18	chr22:28754400-28759200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr22:28754600-28757200	Weak transcription	Fetal Kidney	kidney
20	chr22:28754600-28759200	Weak transcription	Adipose Nuclei	Adipose
21	chr22:28754800-28755800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr22:28754800-28757400	Weak transcription	Fetal Heart	heart
23	chr22:28754800-28766000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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