Variant report

Variant	rs73438416
Chromosome Location	chr11:26724732-26724733
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73438463	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv916187	chr11:26576875-27328603	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26719400-26724800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr11:26721200-26741200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:26722400-26725200	Weak transcription	Rectal Smooth Muscle	rectum
4	chr11:26722800-26725200	Weak transcription	Stomach Smooth Muscle	stomach
5	chr11:26723000-26725800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr11:26723400-26725200	Weak transcription	Duodenum Mucosa	Duodenum
7	chr11:26723400-26726200	Enhancers	Fetal Lung	lung
8	chr11:26724000-26724800	Enhancers	Rectal Mucosa Donor 29	rectum
9	chr11:26724000-26725200	Enhancers	Fetal Stomach	stomach
10	chr11:26724000-26727000	Enhancers	Fetal Intestine Large	intestine
11	chr11:26724000-26727000	Enhancers	Fetal Intestine Small	intestine
12	chr11:26724000-26728200	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr11:26724600-26725000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr11:26724600-26725400	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr11:26724600-26726400	Enhancers	Stomach Mucosa	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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