Variant report

Variant	rs73438944
Chromosome Location	chr15:83934448-83934449
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:83930140..83931783-chr15:83933449..83935643,2	MCF-7	breast:
2	chr15:83930524..83932618-chr15:83933285..83935373,2	K562	blood:
3	chr15:83930330..83932661-chr15:83933343..83936414,4	K562	blood:
4	chr15:83933179..83936065-chr15:83952101..83954549,3	MCF-7	breast:
5	chr15:83925503..83927970-chr15:83932205..83935093,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169594	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11855917	0.92[AFR][1000 genomes]
rs11857168	0.92[AFR][1000 genomes]
rs73437312	0.92[AFR][1000 genomes]
rs73438960	0.92[AFR][1000 genomes]
rs73455462	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534418	chr15:83770116-83960718	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83923200-83937800	Strong transcription	HSMM	muscle
2	chr15:83925200-83937600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr15:83927000-83936800	Weak transcription	Esophagus	oesophagus
4	chr15:83929400-83934600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr15:83929400-83936000	Strong transcription	NHDF-Ad	bronchial
6	chr15:83929800-83936400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr15:83930000-83937400	Strong transcription	Osteobl	bone
8	chr15:83930600-83940800	Strong transcription	HMEC	breast
9	chr15:83930600-83943600	Strong transcription	NHEK	skin
10	chr15:83931200-83941200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr15:83931600-83935800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr15:83931600-83936400	Strong transcription	Muscle Satellite Cultured Cells	--
13	chr15:83932800-83934800	Weak transcription	NHLF	lung
14	chr15:83932800-83935600	Strong transcription	NH-A	brain
15	chr15:83932800-83942200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr15:83932800-83942200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr15:83933000-83937600	Weak transcription	Fetal Muscle Trunk	muscle
18	chr15:83933000-83944400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr15:83933000-83951200	Weak transcription	HSMMtube	muscle
20	chr15:83933200-83940200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr15:83933600-83937400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr15:83933600-83951600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr15:83933600-83951600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr15:83933800-83945800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links