Variant report

Variant	rs73439290
Chromosome Location	chr15:75952050-75952051
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:75951981..75955869-chr15:75961912..75967583,8	MCF-7	breast:
2	chr15:75930676..75935484-chr15:75948921..75956484,11	MCF-7	breast:

Variant related genes	Relation type
ENSG00000177971	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs12102136	1.00[AMR][1000 genomes]
rs16967294	1.00[AMR][1000 genomes]
rs28362067	1.00[AMR][1000 genomes]
rs28372561	1.00[AMR][1000 genomes]
rs28395383	1.00[AMR][1000 genomes]
rs28396803	1.00[AMR][1000 genomes]
rs28398053	1.00[AMR][1000 genomes]
rs28412110	1.00[AMR][1000 genomes]
rs28413637	1.00[AMR][1000 genomes]
rs28414758	1.00[AMR][1000 genomes]
rs28420558	1.00[AMR][1000 genomes]
rs28432282	1.00[AMR][1000 genomes]
rs28450740	1.00[AMR][1000 genomes]
rs28504376	1.00[AMR][1000 genomes]
rs28505697	1.00[AMR][1000 genomes]
rs28510991	1.00[AMR][1000 genomes]
rs28519586	1.00[AMR][1000 genomes]
rs28530778	1.00[AMR][1000 genomes]
rs28533248	1.00[AMR][1000 genomes]
rs28550881	1.00[AMR][1000 genomes]
rs28567605	1.00[AMR][1000 genomes]
rs28628290	1.00[AMR][1000 genomes]
rs28628820	1.00[AMR][1000 genomes]
rs28645531	1.00[AMR][1000 genomes]
rs28664638	1.00[AMR][1000 genomes]
rs28677951	1.00[AMR][1000 genomes]
rs28695912	1.00[AMR][1000 genomes]
rs28711283	1.00[AMR][1000 genomes]
rs28727341	1.00[AMR][1000 genomes]
rs3991368	1.00[AMR][1000 genomes]
rs56686272	1.00[AMR][1000 genomes]
rs57267837	1.00[AMR][1000 genomes]
rs58167659	1.00[AMR][1000 genomes]
rs58689645	1.00[AMR][1000 genomes]
rs59944002	1.00[AMR][1000 genomes]
rs60159975	1.00[AMR][1000 genomes]
rs60465775	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60544586	1.00[AMR][1000 genomes]
rs73439281	1.00[AMR][1000 genomes]
rs73439302	1.00[AMR][1000 genomes]
rs73442996	1.00[AMR][1000 genomes]
rs73444997	1.00[AMR][1000 genomes]
rs8033538	1.00[AMR][1000 genomes]
rs8039385	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531901	chr15:75600108-76019966	Genic enhancers Flanking Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
2	esv3445070	chr15:75623136-76045948	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
3	nsv1048028	chr15:75637515-76019967	Strong transcription Genic enhancers Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	161 gene(s)	inside rSNPs	diseases
4	nsv542436	chr15:75637515-76019967	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	161 gene(s)	inside rSNPs	diseases
5	esv1800424	chr15:75692303-75991451	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	124 gene(s)	inside rSNPs	diseases
6	nsv531903	chr15:75889302-76342128	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
7	esv1813854	chr15:75898640-76002392	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
8	nsv527186	chr15:75924443-76107730	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	69 gene(s)	inside rSNPs	diseases
9	nsv904391	chr15:75930757-76001654	Weak transcription Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
10	nsv904392	chr15:75930757-76039262	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
11	nsv904393	chr15:75932177-76001654	Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
12	nsv984485	chr15:75932760-75965433	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
13	nsv904394	chr15:75948671-76039262	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75941800-75953200	Weak transcription	Fetal Brain Female	brain
2	chr15:75943800-75952800	Weak transcription	Fetal Kidney	kidney
3	chr15:75944400-75952400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr15:75944600-75954400	Genic enhancers	Lung	lung
5	chr15:75944800-75953800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr15:75945000-75952200	Weak transcription	Thymus	Thymus
7	chr15:75945000-75953000	Weak transcription	HUVEC	blood vessel
8	chr15:75945000-75954000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr15:75945000-75954400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr15:75945200-75953000	Weak transcription	Fetal Brain Male	brain
11	chr15:75945200-75955000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr15:75945400-75953000	Weak transcription	Fetal Thymus	thymus
13	chr15:75945600-75953000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr15:75945800-75952800	Weak transcription	Small Intestine	intestine
15	chr15:75946000-75952400	Weak transcription	NH-A	brain
16	chr15:75946000-75953200	Genic enhancers	Pancreas	Pancrea
17	chr15:75946000-75953400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr15:75946200-75952600	Strong transcription	Fetal Stomach	stomach
19	chr15:75946200-75952800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr15:75946200-75953000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr15:75946600-75952600	Strong transcription	Osteobl	bone
22	chr15:75946800-75952800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr15:75946800-75956600	Weak transcription	K562	blood
24	chr15:75947200-75955200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr15:75947600-75952400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr15:75947800-75952200	Weak transcription	Brain Hippocampus Middle	brain
27	chr15:75947800-75952400	Strong transcription	Gastric	stomach
28	chr15:75947800-75952800	Strong transcription	Left Ventricle	heart
29	chr15:75947800-75953200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr15:75948200-75952400	Weak transcription	Brain Anterior Caudate	brain
31	chr15:75948200-75952800	Strong transcription	Hela-S3	cervix
32	chr15:75948400-75953000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr15:75948600-75952800	Strong transcription	HepG2	liver
34	chr15:75948800-75952800	Strong transcription	Fetal Intestine Small	intestine
35	chr15:75948800-75954200	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr15:75948800-75957400	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr15:75949000-75953200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
38	chr15:75949400-75952600	Strong transcription	Colonic Mucosa	Colon
39	chr15:75949400-75952800	Strong transcription	HUES6 Cell Line	embryonic stem cell
40	chr15:75949400-75952800	Strong transcription	Fetal Intestine Large	intestine
41	chr15:75949800-75953200	Genic enhancers	Right Ventricle	heart
42	chr15:75950000-75952400	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr15:75950000-75952800	Genic enhancers	Stomach Smooth Muscle	stomach
44	chr15:75950000-75953200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr15:75950000-75953400	Genic enhancers	Placenta Amnion	Placenta Amnion
46	chr15:75950400-75952400	Weak transcription	Brain Cingulate Gyrus	brain
47	chr15:75950400-75952600	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr15:75950400-75953200	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr15:75950400-75953200	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
50	chr15:75950400-75964000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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