Variant report

Variant	rs73440165
Chromosome Location	chr18:44854549-44854550
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs55698938	0.96[AFR][1000 genomes]
rs66485937	0.91[AFR][1000 genomes]
rs67119810	0.96[AFR][1000 genomes]
rs67514853	0.91[AFR][1000 genomes]
rs73428065	0.91[AFR][1000 genomes]
rs73428067	0.83[AFR][1000 genomes]
rs73428073	0.91[AFR][1000 genomes]
rs73440163	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833641	chr18:44815063-45020202	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:44839800-44858400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr18:44854000-44854800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr18:44854000-44855000	Enhancers	H9 Cell Line	embryonic stem cell
4	chr18:44854400-44855000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr18:44854400-44855000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr18:44854400-44855000	Enhancers	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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