Variant report

Variant	rs73441812
Chromosome Location	chr7:120229680-120229681
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs60553829	1.00[AMR][1000 genomes]
rs73437857	1.00[AMR][1000 genomes]
rs73439886	0.82[AFR][1000 genomes]
rs73439892	0.82[AFR][1000 genomes]
rs73441819	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73441841	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889117	chr7:120122040-120266458	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120225000-120230000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:120225200-120229800	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr7:120225600-120249000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:120228600-120230000	Enhancers	Fetal Kidney	kidney

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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