Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10085239	0.82[AMR][1000 genomes]
rs10447407	0.81[EUR][1000 genomes]
rs10948810	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12191165	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12193042	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12199953	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12201064	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12201103	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12204972	0.88[AMR][1000 genomes]
rs12206200	0.81[EUR][1000 genomes]
rs12212689	0.81[EUR][1000 genomes]
rs12212836	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1340660	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2202801	0.88[AMR][1000 genomes]
rs2297980	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60334573	0.81[EUR][1000 genomes]
rs7746489	0.81[EUR][1000 genomes]
rs7774316	0.80[EUR][1000 genomes]
rs9382318	0.81[EUR][1000 genomes]
rs9382319	0.81[EUR][1000 genomes]
rs9464051	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067663	chr6:53796341-54449718	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529158	chr6:53796341-54449718	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv885888	chr6:54132353-54266032	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54168800-54176400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:54171800-54176600	Active TSS	Rectal Mucosa Donor 29	rectum
3	chr6:54172200-54176200	Active TSS	Fetal Kidney	kidney
4	chr6:54172400-54176600	Active TSS	Duodenum Mucosa	Duodenum
5	chr6:54172600-54175200	Active TSS	Rectal Smooth Muscle	rectum
6	chr6:54172600-54176200	Active TSS	Colonic Mucosa	Colon
7	chr6:54172800-54176600	Active TSS	Rectal Mucosa Donor 31	rectum
8	chr6:54173000-54178000	Active TSS	Fetal Intestine Large	intestine
9	chr6:54173000-54178200	Active TSS	Fetal Intestine Small	intestine

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