Variant report

Variant	rs73443059
Chromosome Location	chr15:83405645-83405646
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:83399718..83402328-chr15:83405366..83406939,2	K562	blood:
2	chr15:83395300..83397667-chr15:83404148..83406550,2	MCF-7	breast:
3	chr15:83405385..83407649-chr15:83418078..83420843,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259315	Chromatin interaction
ENSG00000250988	Chromatin interaction
ENSG00000266697	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11858177	1.00[AMR][1000 genomes]
rs11858206	1.00[AMR][1000 genomes]
rs11858816	1.00[AMR][1000 genomes]
rs17158419	1.00[AMR][1000 genomes]
rs55700126	0.81[AFR][1000 genomes]
rs60943160	1.00[AMR][1000 genomes]
rs73439123	1.00[AMR][1000 genomes]
rs73439143	1.00[AMR][1000 genomes]
rs73439148	1.00[AMR][1000 genomes]
rs73443041	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73443047	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054171	chr15:83237514-83468077	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv1036950	chr15:83245326-83461261	Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Active TSS Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv1036462	chr15:83245326-83472507	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
4	esv34318	chr15:83283555-83453495	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
5	nsv1039021	chr15:83283994-83431548	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
6	esv3493740	chr15:83295897-83458896	Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
7	esv3493739	chr15:83296247-83458846	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
8	esv3493738	chr15:83296905-83457854	Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
9	esv3493742	chr15:83296993-83457792	Weak transcription Active TSS Bivalent Enhancer Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
10	nsv817702	chr15:83299461-83457424	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
11	esv3413738	chr15:83390947-83422928	Active TSS Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83393600-83406600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr15:83393800-83418400	Weak transcription	Thymus	Thymus
3	chr15:83394400-83418200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr15:83394400-83418400	Weak transcription	Primary B cells from cord blood	blood
5	chr15:83394600-83407200	Weak transcription	HSMMtube	muscle
6	chr15:83394800-83418400	Weak transcription	Brain Angular Gyrus	brain
7	chr15:83395600-83407600	Weak transcription	Spleen	Spleen
8	chr15:83395800-83418200	Weak transcription	GM12878-XiMat	blood
9	chr15:83396200-83417800	Weak transcription	Fetal Muscle Trunk	muscle
10	chr15:83396600-83418200	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr15:83397600-83410600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr15:83398000-83409200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr15:83398400-83418200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr15:83399200-83418000	Weak transcription	Left Ventricle	heart
15	chr15:83399600-83410600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr15:83399800-83408400	Weak transcription	Ovary	ovary
17	chr15:83399800-83413400	Weak transcription	Lung	lung
18	chr15:83399800-83418400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr15:83399800-83418400	Weak transcription	Adipose Nuclei	Adipose
20	chr15:83400000-83407600	Weak transcription	HSMM	muscle
21	chr15:83400400-83418400	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr15:83401200-83407400	Strong transcription	Primary T helper cells fromperipheralblood	blood
23	chr15:83401200-83418400	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr15:83401600-83405800	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr15:83401600-83406200	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr15:83401800-83410200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr15:83402000-83418200	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr15:83402200-83406400	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr15:83402200-83407000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr15:83402200-83411200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr15:83402400-83407000	Weak transcription	Fetal Stomach	stomach
32	chr15:83402400-83412800	Weak transcription	Fetal Muscle Leg	muscle
33	chr15:83402400-83418200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr15:83402600-83405800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr15:83402600-83407800	Weak transcription	Osteobl	bone
36	chr15:83402600-83418200	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr15:83402800-83411200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr15:83402800-83418200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr15:83403000-83408000	Weak transcription	HUVEC	blood vessel
40	chr15:83403400-83409800	Weak transcription	Placenta	Placenta
41	chr15:83403600-83406400	Strong transcription	Liver	Liver
42	chr15:83403600-83407800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr15:83403600-83410600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr15:83403800-83409400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr15:83404000-83418000	Weak transcription	Dnd41	blood
46	chr15:83404200-83410800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr15:83404400-83407200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr15:83404600-83407000	Weak transcription	NHEK	skin
49	chr15:83404800-83407600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr15:83405200-83411200	Weak transcription	Primary T cells fromperipheralblood	blood

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