Variant report

Variant	rs73445938
Chromosome Location	chr18:45528884-45528885
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:45522234..45524645-chr18:45528573..45530359,2	MCF-7	breast:
2	chr18:45528601..45531772-chr18:45533301..45535605,3	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs59073291	0.95[AFR][1000 genomes]
rs73445924	0.93[AFR][1000 genomes]
rs73445941	1.00[AFR][1000 genomes]
rs73445944	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909616	chr18:45467806-45844500	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1066479	chr18:45505569-45554507	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1055669	chr18:45513090-45559375	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45517600-45529000	Weak transcription	Right Ventricle	heart
2	chr18:45520400-45529600	Weak transcription	Stomach Mucosa	stomach
3	chr18:45524200-45529000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr18:45525200-45531200	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr18:45526200-45529000	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr18:45526200-45529200	Enhancers	Hela-S3	cervix
7	chr18:45526600-45529200	Weak transcription	Fetal Thymus	thymus
8	chr18:45526800-45529000	Weak transcription	HUVEC	blood vessel
9	chr18:45527200-45530200	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr18:45527200-45530800	Weak transcription	Primary hematopoietic stem cells	blood
11	chr18:45527400-45529800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr18:45527400-45529800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr18:45527400-45530000	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr18:45528400-45529600	Enhancers	A549	lung
15	chr18:45528400-45531200	Enhancers	Placenta	Placenta
16	chr18:45528600-45531400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr18:45528800-45529200	Weak transcription	HSMMtube	muscle
18	chr18:45528800-45529800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr18:45528800-45530000	Weak transcription	Fetal Kidney	kidney
20	chr18:45528800-45530600	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr18:45528800-45530800	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr18:45528800-45531200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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