Variant report

Variant	rs73446336
Chromosome Location	chr21:40025408-40025409
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs2187306	1.00[AMR][1000 genomes]
rs59592764	1.00[AMR][1000 genomes]
rs59907098	1.00[AMR][1000 genomes]
rs73432978	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73433002	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73434824	1.00[AMR][1000 genomes]
rs73440728	1.00[AMR][1000 genomes]
rs73440730	1.00[AMR][1000 genomes]
rs73440743	1.00[AMR][1000 genomes]
rs73440746	1.00[AMR][1000 genomes]
rs73440751	1.00[AMR][1000 genomes]
rs73440753	1.00[AMR][1000 genomes]
rs73440758	1.00[AMR][1000 genomes]
rs73440772	1.00[AMR][1000 genomes]
rs73442739	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1057719	chr21:40009959-40025433	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1058663	chr21:40009959-40031681	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1055287	chr21:40013735-40031681	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:40016000-40027000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr21:40024800-40027400	Weak transcription	Aorta	Aorta
3	chr21:40025400-40026000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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