Variant report

Variant	rs73448684
Chromosome Location	chr9:72820690-72820691
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:72805117..72807381-chr9:72819423..72821508,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs57251050	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73449455	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047862	chr9:72746875-73138287	Enhancers Strong transcription Genic enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72793000-72842600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr9:72802000-72827000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:72809600-72837800	Weak transcription	NH-A	brain
4	chr9:72810800-72827800	Weak transcription	Colon Smooth Muscle	Colon
5	chr9:72819600-72821000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr9:72819600-72821000	ZNF genes & repeats	Liver	Liver
7	chr9:72820000-72820800	Enhancers	Placenta Amnion	Placenta Amnion
8	chr9:72820000-72820800	Flanking Active TSS	NHEK	skin
9	chr9:72820000-72821200	Enhancers	Fetal Lung	lung
10	chr9:72820000-72821400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr9:72820000-72821600	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr9:72820200-72821200	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr9:72820200-72821200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr9:72820400-72820800	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr9:72820400-72820800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr9:72820400-72820800	Active TSS	Adipose Nuclei	Adipose
17	chr9:72820400-72820800	ZNF genes & repeats	Left Ventricle	heart
18	chr9:72820400-72821000	Enhancers	Fetal Muscle Leg	muscle
19	chr9:72820400-72821000	Enhancers	HSMM	muscle
20	chr9:72820400-72821200	Enhancers	HMEC	breast
21	chr9:72820400-72821200	Enhancers	HSMMtube	muscle
22	chr9:72820400-72821400	Strong transcription	Duodenum Smooth Muscle	Duodenum
23	chr9:72820400-72821400	Strong transcription	Stomach Smooth Muscle	stomach
24	chr9:72820600-72820800	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
25	chr9:72820600-72821000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
26	chr9:72820600-72821200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr9:72820600-72821200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr9:72820600-72821400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr9:72820600-72826800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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