Variant report

Variant	rs73448890
Chromosome Location	chr21:40159565-40159566
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr21:40155047..40156844-chr21:40159379..40161340,2	MCF-7	breast:
2	chr21:40158395..40160245-chr21:40285498..40288135,2	MCF-7	breast:
3	chr21:40158041..40161910-chr21:40175596..40180594,8	K562	blood:
4	chr21:40159408..40162072-chr21:40163674..40168810,7	MCF-7	breast:
5	chr21:39714897..39716784-chr21:40158367..40161064,2	MCF-7	breast:
6	chr21:40158174..40165115-chr21:40166769..40170231,7	K562	blood:
7	chr21:40159503..40161040-chr21:40181420..40184054,2	K562	blood:
8	chr21:40157809..40160879-chr21:40282729..40285436,3	MCF-7	breast:
9	chr21:40156704..40162526-chr21:40173499..40179988,10	MCF-7	breast:
10	chr21:40158554..40160478-chr21:40163082..40164922,2	K562	blood:
11	chr21:40140717..40143513-chr21:40158331..40160522,2	MCF-7	breast:
12	chr21:40156369..40159602-chr21:40175863..40178894,4	K562	blood:
13	chr21:40145518..40147915-chr21:40158381..40160685,2	K562	blood:
14	chr21:40158554..40160744-chr21:40179736..40182469,2	MCF-7	breast:
15	chr21:40156601..40161503-chr21:40174870..40178905,10	MCF-7	breast:
16	chr21:40021665..40023567-chr21:40158455..40160815,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000157557	Chromatin interaction
ENSG00000234035	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs28483264	1.00[AMR][1000 genomes]
rs57817437	1.00[AMR][1000 genomes]
rs61015650	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7281397	1.00[AMR][1000 genomes]
rs73442786	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73448879	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73448897	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73450541	1.00[AMR][1000 genomes]
rs73450542	1.00[AMR][1000 genomes]
rs8126940	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1060405	chr21:40095523-40159813	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1058591	chr21:40114130-40190594	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv516348	chr21:40116044-40161381	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv913743	chr21:40116044-40161381	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1055623	chr21:40118451-40161072	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1056485	chr21:40128875-40159813	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:40156200-40159800	Enhancers	Stomach Mucosa	stomach
2	chr21:40156200-40163600	Enhancers	Fetal Intestine Small	intestine
3	chr21:40156400-40163200	Enhancers	Fetal Intestine Large	intestine
4	chr21:40157800-40159600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr21:40157800-40159600	Enhancers	GM12878-XiMat	blood
6	chr21:40157800-40160200	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr21:40157800-40161800	Weak transcription	Fetal Lung	lung
8	chr21:40158000-40159600	Enhancers	A549	lung
9	chr21:40158200-40159600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr21:40158200-40160200	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr21:40158200-40161200	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr21:40158400-40159600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr21:40158400-40160200	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr21:40158400-40160200	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr21:40158400-40160400	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr21:40158600-40159600	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr21:40158600-40159800	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr21:40158600-40159800	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr21:40158600-40161000	Weak transcription	Small Intestine	intestine
20	chr21:40158800-40159600	Enhancers	Hela-S3	cervix
21	chr21:40158800-40159600	Enhancers	NHEK	skin
22	chr21:40159000-40160200	Enhancers	H1 Cell Line	embryonic stem cell
23	chr21:40159200-40159600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr21:40159200-40159600	Enhancers	HMEC	breast
25	chr21:40159200-40159600	Enhancers	K562	blood
26	chr21:40159200-40159800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr21:40159200-40159800	Enhancers	Liver	Liver
28	chr21:40159200-40159800	Active TSS	Duodenum Mucosa	Duodenum
29	chr21:40159200-40159800	Enhancers	NH-A	brain
30	chr21:40159200-40160200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr21:40159200-40160600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr21:40159200-40160600	Enhancers	Placenta	Placenta
33	chr21:40159200-40160800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr21:40159200-40161400	Enhancers	Pancreas	Pancrea
35	chr21:40159400-40159600	Enhancers	HepG2	liver
36	chr21:40159400-40160000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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