Variant report

Variant	rs73449212
Chromosome Location	chr15:76117317-76117318
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:76112768..76114587-chr15:76115291..76118050,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs55923723	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58619115	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs59596752	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73447043	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531903	chr15:75889302-76342128	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv904397	chr15:76072030-76119092	Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76114600-76119600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr15:76115000-76119400	Weak transcription	NHEK	skin
3	chr15:76115800-76118800	Weak transcription	K562	blood
4	chr15:76116600-76119000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr15:76116600-76119400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr15:76116800-76119000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr15:76116800-76119200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr15:76116800-76119600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr15:76116800-76119800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr15:76116800-76123200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr15:76116800-76123400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr15:76117000-76118600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr15:76117000-76119400	Weak transcription	Placenta	Placenta
14	chr15:76117000-76119600	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr15:76117000-76119600	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr15:76117000-76120000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr15:76117000-76120000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr15:76117000-76122800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr15:76117000-76123200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr15:76117000-76123800	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr15:76117200-76123000	Weak transcription	HUES64 Cell Line	embryonic stem cell

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