Variant report

Variant	rs73449521
Chromosome Location	chr9:71167380-71167381
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:71162331..71165106-chr9:71166259..71168018,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1107109	1.00[AMR][1000 genomes]
rs12002970	1.00[AMR][1000 genomes]
rs12003362	1.00[AMR][1000 genomes]
rs55931741	1.00[AMR][1000 genomes]
rs56017605	1.00[AMR][1000 genomes]
rs56173513	1.00[AMR][1000 genomes]
rs56822677	1.00[AMR][1000 genomes]
rs56885985	1.00[AMR][1000 genomes]
rs57085507	1.00[AMR][1000 genomes]
rs57105289	1.00[AMR][1000 genomes]
rs57442310	1.00[AMR][1000 genomes]
rs58120494	1.00[AMR][1000 genomes]
rs58282494	1.00[AMR][1000 genomes]
rs60175722	1.00[AMR][1000 genomes]
rs73449506	1.00[AFR][1000 genomes]
rs73646709	1.00[AMR][1000 genomes]
rs73646710	1.00[AMR][1000 genomes]
rs73646712	1.00[AMR][1000 genomes]
rs73646713	1.00[AMR][1000 genomes]
rs73646714	1.00[AMR][1000 genomes]
rs73646754	1.00[AMR][1000 genomes]
rs73646755	1.00[AMR][1000 genomes]
rs73646758	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893413	chr9:71130848-71196984	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv893411	chr9:71130848-71199545	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv893412	chr9:71130848-71199545	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1024967	chr9:71130848-71210031	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv482506	chr9:71130848-71280888	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv466392	chr9:71130848-71318817	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv614546	chr9:71130848-71318817	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv1026962	chr9:71130848-71357605	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv1032210	chr9:71130848-71511987	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
10	nsv893414	chr9:71139378-71320732	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71152200-71170600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:71162000-71167800	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr9:71162000-71169800	Weak transcription	Gastric	stomach
4	chr9:71162200-71167400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr9:71162200-71167400	Weak transcription	Small Intestine	intestine
6	chr9:71162200-71174800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr9:71162200-71175000	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr9:71163000-71170400	Weak transcription	Fetal Kidney	kidney
9	chr9:71163200-71168000	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr9:71163600-71170400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr9:71165400-71167800	Enhancers	Fetal Intestine Large	intestine
12	chr9:71165400-71168000	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr9:71165600-71169400	Enhancers	Stomach Mucosa	stomach
14	chr9:71166000-71168000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr9:71166000-71169600	Enhancers	Colon Smooth Muscle	Colon
16	chr9:71166000-71169600	Enhancers	Rectal Smooth Muscle	rectum
17	chr9:71166400-71170600	Weak transcription	Primary B cells from cord blood	blood
18	chr9:71166400-71170800	Weak transcription	Primary hematopoietic stem cells	blood
19	chr9:71166600-71167400	Enhancers	Primary neutrophils fromperipheralblood	blood
20	chr9:71166600-71173600	Weak transcription	Left Ventricle	heart
21	chr9:71166600-71173600	Weak transcription	Right Atrium	heart
22	chr9:71166800-71167600	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr9:71166800-71168000	Enhancers	Monocytes-CD14+_RO01746	blood
24	chr9:71166800-71170000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr9:71167000-71167800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr9:71167000-71168000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr9:71167000-71168200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr9:71167200-71167600	Weak transcription	Fetal Heart	heart
29	chr9:71167200-71168600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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